Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0828
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0370 + 2909216-2909797 41 9e-04
04_03_0463 - 16200690-16200986,16202010-16202258,16202562-162026... 33 0.24
12_01_0605 - 4983235-4983849,4985658-4986578 30 2.2
08_02_1449 - 27174451-27178005 29 2.9
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 29 2.9
01_01_0088 + 688792-691441,691629-693013 29 2.9
10_01_0256 - 2688172-2688786,2690779-2690857,2691567-2691652,269... 29 3.8
01_01_0320 - 2578911-2579144,2579243-2579455,2579580-2579858,257... 29 3.8
11_03_0181 - 11301759-11301838,11302294-11303095 29 5.1
01_02_0038 - 10487024-10487728,10487824-10488272,10488356-10489070 28 6.7
08_02_0196 - 14125037-14125175,14125525-14125604,14125938-141264... 28 8.8
01_05_0003 - 16841745-16841912,16842005-16842259,16842938-168430... 28 8.8
>05_01_0370 + 2909216-2909797
Length = 193
Score = 41.1 bits (92), Expect = 9e-04
Identities = 24/84 (28%), Positives = 36/84 (42%)
Frame = +1
Query: 256 MGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAA 435
M A++++W E G L + QL+ +W P+ GL + ++ A
Sbjct: 98 MALAAWMVWAE-GGLHRRPGATLAPFVAQLVAALAWAPLALGLAAPAAGLACCAAMAAGA 156
Query: 436 VATTLSFGSVNKTAGLLLIPYLAW 507
A FG VN AG L P +AW
Sbjct: 157 AACARGFGGVNPVAGDLAKPCVAW 180
>04_03_0463 -
16200690-16200986,16202010-16202258,16202562-16202697,
16203150-16203368,16204137-16204515,16205010-16205253
Length = 507
Score = 33.1 bits (72), Expect = 0.24
Identities = 26/73 (35%), Positives = 35/73 (47%)
Frame = -2
Query: 653 YYLFEINTFSYIYI*GIKQNIPLSGSLLSLHRFRIVLPDVVRKGAGISGQAKYGMSNKPA 474
Y L EIN +I ++ L LL H F V PDV K G G+ G++N P
Sbjct: 47 YSLSEINASEFIS--SSLHDVALRFRLLRQHGFH-VSPDVFNKFKGDDGRFVSGITNDPR 103
Query: 473 VLLTLPNDSVVAT 435
LL+L N + + T
Sbjct: 104 GLLSLYNAAHLLT 116
>12_01_0605 - 4983235-4983849,4985658-4986578
Length = 511
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -2
Query: 581 GSLLSLHRFRIVLPDVVRKGAGISGQAKYGMS 486
GSL+ H+F+ LP+VV+K G+ K+G++
Sbjct: 467 GSLV--HQFQWTLPEVVKKNGGVDMAEKFGLT 496
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 322 LTLYGVQLLLNWSWTPIFFGLKDFKLAFIEISVLSGAAVATTLSF-GSVNKTAGLLLIPY 498
L +Y L+N PI L F+ I ++ LS A + L++ G + + L +IP
Sbjct: 878 LKIYNCPKLVNIPKAPILRELDIFQCR-IALNSLSHLAALSQLNYVGDWSVSKDLQVIPI 936
Query: 499 LAWPDMPAPFLTTSGRTIL 555
+WP + L + G ++L
Sbjct: 937 RSWPSLVTLALASLGNSLL 955
>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 149 IRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSTWD-MPLTSSGRNVMVLLKMQSYLS 325
+RK + K W + L+K W K T L ++D +P + L + Y
Sbjct: 901 LRKKPTRKHWMEILEKEEWLKQKDGDDSIITALKISYDYLPFYLKKCFSYLALFPEDYEF 960
Query: 326 HCTEYSCYSTGLGLLFSS 379
E SCY +G++ SS
Sbjct: 961 DSLEISCYWDSIGIINSS 978
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +2
Query: 149 IRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSTWD-MPLTSSGRNVMVLLKMQSYLS 325
+RK + K W + L+K W K T L ++D +P + L + Y
Sbjct: 457 LRKKPTRKHWMEILEKEEWLKQKDGDDSIITALKISYDYLPFYLKKCFSYLALFPEDYEF 516
Query: 326 HCTEYSCYSTGLGLLFSS 379
E SCY +G++ SS
Sbjct: 517 DSLEISCYWDSIGIINSS 534
>10_01_0256 -
2688172-2688786,2690779-2690857,2691567-2691652,
2693046-2693113,2695175-2695244,2696191-2696320,
2696924-2697906
Length = 676
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -2
Query: 566 LHRFRIVLPDVVRKGAGISGQAKYGMS 486
+H+F+ LP+VV+K G+ K+G++
Sbjct: 635 VHQFQWTLPEVVKKNGGVDMAEKFGIT 661
>01_01_0320 -
2578911-2579144,2579243-2579455,2579580-2579858,
2579961-2580050,2580258-2580439,2581366-2582470
Length = 700
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 173 SWYDELKKPSWTPPK 217
SW +E+KKPSW P K
Sbjct: 600 SWQEEIKKPSWHPYK 614
>11_03_0181 - 11301759-11301838,11302294-11303095
Length = 293
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 203 WTPPKWVFGPAWTVLYSTWDMPLTSSGRNVMVLLKM 310
WT P W TVL STW + ++S V ++ +
Sbjct: 236 WTSPVWSATSRPTVLLSTWQVTCSTSSHRVKQVIDL 271
>01_02_0038 - 10487024-10487728,10487824-10488272,10488356-10489070
Length = 622
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 397 LAFIEISVLSGAAVATTLSFGSVNKTAGLLLIPYLAWPDMPAPFL 531
+AF+E+ V G T ++ A L L+P L P++PAP L
Sbjct: 265 VAFLEVEVDGGTPARTPTE--RLDVPAFLRLVPSLEVPELPAPVL 307
>08_02_0196 -
14125037-14125175,14125525-14125604,14125938-14126463,
14126809-14126852,14127444-14127584,14127696-14128463
Length = 565
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 226 WSSLDCSLQHMGYASYLIWEECDGFTEDAVLPLTLYGVQLLLNWSW 363
W+S + S+ +L+ E D D V+P+ + +LL W W
Sbjct: 74 WTSCNLSITRRVKVPFLLGEFSDNVECD-VVPVPMSSCHILLGWQW 118
>01_05_0003 -
16841745-16841912,16842005-16842259,16842938-16843085,
16843740-16843854,16844294-16844465,16844481-16844617,
16844738-16844792
Length = 349
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = +2
Query: 155 KDNSEKSWYDELKKPSWTP----PKWVFGPAWTVLYSTWDMPLTSSGRNVM 295
+++S S ++ + W P P W P ++ STW P+ + G +M
Sbjct: 231 RESSSYSTPVKMYEAGWAPTGDAPGWTQAPRHSIGVSTWQAPVRTGGMRLM 281
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,184,008
Number of Sequences: 37544
Number of extensions: 495603
Number of successful extensions: 1242
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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