Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0828
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)                    31   0.73 
SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)                   30   1.7  
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)             28   9.0  

>SB_7579| Best HMM Match : HEAT (HMM E-Value=0.0096)
          Length = 1276

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 207 LPQSGYLVQLGLFSTAH-GICLLPH--LGGM*WFY*RCSPTSHIVRSTAATQLVLDSYFL 377
           LP+   L  L  F T H  + LLP   L  + W + RCS       S   ++ +L+SY L
Sbjct: 720 LPEKAMLSALDTFITLHRNLSLLPRPILKNLLWLFARCSFLHKARPSLTTSETILESYVL 779

Query: 378 RIE 386
            ++
Sbjct: 780 ALK 782


>SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 446 VVATAAPDSTEISMNASLKSFNPKKIGVQDQLSSSCTPYNVRGRTASSVKPS 291
           + AT  P+S E + N S+ +++  K+G         T YN+  R   +VKPS
Sbjct: 1   MAATVMPESNEENKNPSVNTYSLNKVGSCG--IGLLTEYNIPPRKGPTVKPS 50


>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2532

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 309  CSPTSHIVRSTAATQLVLDSYFLRIEGLQAGIH*DLSAVRGSSGNDTVIRQCQ 467
            C P S I+RS  ++ L  +    ++ GLQ   +   S + G+ G D   R C+
Sbjct: 1365 CHPQSWIIRSKISSNLTGEPPKRKLNGLQQVCNNMASVLSGTEGKDNFSRLCR 1417


>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
          Length = 1048

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 480 FVTHTILGLAGYASSLSYYIWKNNPKPV 563
           +V++ + GLAG+   +++Y+W    KP+
Sbjct: 81  YVSYALYGLAGFVGFINHYLWPQMRKPL 108


>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = +2

Query: 65  VMANWPALG----SIILPNVGGWANGLFFAGQIRKDNSEKSWYDELKKPSWTPP 214
           ++ NWP       S+++P +  W      +G+       + W  + K+P W PP
Sbjct: 397 ILINWPFQQEYRTSLLIPRIF-WVKDSHMSGECGLGALSRDWVYDRKRPRWRPP 449


>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
          Length = 2232

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 542  PDVVRKGAGISGQAKYGMSNKPAVLLTLPNDSVVATAAPDSTEISM 405
            P+V+    G SG   +G S +   L   P+  VV    PD  E+ +
Sbjct: 1877 PNVITLPEGYSGDDSFGESKEMDGLSDKPSVKVVPVYTPDEAEVKL 1922


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,335,391
Number of Sequences: 59808
Number of extensions: 555213
Number of successful extensions: 1205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)