Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0828
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.32 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   1.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   3.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.1  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 234 AGPNTHFGGVQLGFFNSS 181
           +GP    GGV+LG+FN S
Sbjct: 55  SGPEESSGGVELGWFNDS 72


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 332 YNVRGRTASSVKPSHSSQMR*EAYPMCCREQSK 234
           Y  RGR +S ++ S S   + E   MCC+E  +
Sbjct: 51  YACRGRCSSYLQVSGSKIWQMERSCMCCQESGE 83


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = -3

Query: 289 IPPR*GKRHIPCAVENSPSWTKYPLWGSPAWLL*LIIPGLFTVVFTDLTR-KEQSIGP 119
           +P   GK   PC ++  P WT   +         LIIPG   ++ T  T   E+  GP
Sbjct: 28  LPSWDGKMPQPCILKPKPLWTGKQISS-------LIIPGNVNMIRTHSTXPXEEDDGP 78


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = +2

Query: 173 SWYDELKKPSWTPPKWVFGPAWTVLYSTWDMPLTSSGRNVMVLLKMQSYLSHCTEY 340
           SW     KP   P +   G    +  ST      +S   V  L  + +++S CT +
Sbjct: 262 SWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASLPPVSYLKAVDAFMSVCTVF 317


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/36 (19%), Positives = 18/36 (50%)
 Frame = +2

Query: 218 WVFGPAWTVLYSTWDMPLTSSGRNVMVLLKMQSYLS 325
           W+FG  W  ++   D+ + ++    +  + +  YL+
Sbjct: 131 WIFGDLWCSIWLAVDVWMCTASILNLCAISLDRYLA 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,416
Number of Sequences: 438
Number of extensions: 5161
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)