Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0828
         (735 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65560.1 68418.m08249 pentatricopeptide (PPR) repeat-containi...    31   1.0  
At1g11340.1 68414.m01302 S-locus lectin protein kinase family pr...    30   1.8  
At2g23610.1 68415.m02817 esterase, putative similar to ethylene-...    29   2.4  
At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR ...    29   4.2  
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF...    29   4.2  
At5g27970.1 68418.m03369 expressed protein                             28   7.4  
At3g30280.1 68416.m03824 transferase family protein similar to d...    27   9.8  

>At5g65560.1 68418.m08249 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 915

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 23/73 (31%), Positives = 35/73 (47%)
 Frame = -2

Query: 668 LMKSNYYLFEINTFSYIYI*GIKQNIPLSGSLLSLHRFRIVLPDVVRKGAGISGQAKYGM 489
           LM+S        T++ +     K N+  +  +L+    R VLPDVV   + I GQ + G 
Sbjct: 418 LMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477

Query: 488 SNKPAVLLTLPND 450
            +    LL+L ND
Sbjct: 478 FDSAYRLLSLMND 490


>At1g11340.1 68414.m01302 S-locus lectin protein kinase family
           protein contains protein kinase domain, Pfam:PF00069;
           contains S-locus glycoprotein family domain,
           Pfam:PF00954
          Length = 901

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 179 TRTFHC-CLYGFDPQRTVHWPIHRHLGG*SNRVQAN 75
           ++TF C CL GF+P+   HW +    GG + + +A+
Sbjct: 369 SKTFECTCLPGFEPKFPRHWFLRDSSGGCTKKKRAS 404


>At2g23610.1 68415.m02817 esterase, putative similar to
           ethylene-induced esterase [Citrus sinensis] GI:14279437,
           polyneuridine aldehyde esterase [Rauvolfia serpentina]
           GI:6651393; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 263

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 134 FFAGQIRKDNSEKSWYDEL---KKPSWTPPKWVFGP 232
           F   ++RK+ S + W D +   +KP +    W+FGP
Sbjct: 121 FVWDKLRKETSREEWLDTVFTSEKPDFPSEFWIFGP 156


>At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 843

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 620 IYI*GIKQNIPLSGSLLSLHRFRIVLPDVVRKGAGISGQAK 498
           IY+ G+K +    G+L SLH+  +V  D+   G    G+ +
Sbjct: 685 IYLEGLKVSFAAIGTLSSLHKLEMVNCDITESGTEWEGKRR 725


>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
           PF02984: Cyclin, C-terminal domain
          Length = 1025

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/81 (28%), Positives = 36/81 (44%)
 Frame = +2

Query: 137 FAGQIRKDNSEKSWYDELKKPSWTPPKWVFGPAWTVLYSTWDMPLTSSGRNVMVLLKMQS 316
           F+  +  D+S+    +E +  S          ++   YSTW+ PLTS   N + LL  + 
Sbjct: 566 FSSMLTSDHSQNGMPEEERGSSTGEILDRLKSSYRQAYSTWNQPLTSVVDNSVDLLNSEL 625

Query: 317 YLSHCTEYSCYSTGLGLLFSS 379
            + H       S  +GLL SS
Sbjct: 626 DVVH---IRLSSHQIGLLLSS 643


>At5g27970.1 68418.m03369 expressed protein
          Length = 1629

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
 Frame = -2

Query: 590 PLSGSLLSLHRFRIVLP-DVVRKG---AGISGQAKYGMSNKPAVLLTLPNDSVVAT 435
           PL+  L SL +F IVLP DV RK    + +S +++  +  K  ++LT  N   + T
Sbjct: 570 PLNSFLASLCKFTIVLPTDVERKSVVQSPVSKRSEVQVDLKDVIVLTPKNVQALRT 625


>At3g30280.1 68416.m03824 transferase family protein similar to
           deacetylvindoline 4-O-acetyltransferase [Catharanthus
           roseus][GI:4091808][PMID:9681034], alcohol
           acyltransferase [Fragaria x
           ananassa][GI:10121328][PMID:10810141]
          Length = 443

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = -3

Query: 235 SWTKYPL------WGSPAWLL*LIIPGLFTVVFTDLTRKEQSIGPSTDIWEDN 95
           SW K PL      WGSP W+   + P L  V     ++  Q I     + E+N
Sbjct: 369 SWCKLPLYEASFGWGSPVWIAGNVAPMLENVTMLIDSKDGQGIEAFVTLPEEN 421


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,148,894
Number of Sequences: 28952
Number of extensions: 397536
Number of successful extensions: 1003
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)