Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0827
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   0.65 
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   2.0  
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch...    25   4.6  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    24   6.1  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    24   6.1  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   6.1  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.5 bits (58), Expect = 0.65
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 294  AAWVQRMALSCSRLTETLPVXLC*AWQYSALSKRNSINVXTEGISRYF 151
            A+W +R   SCS++  TLP   C  ++Y    K+++++    G  R F
Sbjct: 2091 ASWTERRLQSCSQIEVTLPCVEC-FFKY----KKDALHTLLPGFMRCF 2133


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 80  HAQQKLSL*TELKVRSLHCSGSTLS 6
           H QQ+ S    L VR L C  STLS
Sbjct: 159 HTQQRYSTLKRLMVRCLSCEYSTLS 183


>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
           Rga5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 344 VGMWNSARGAXSH-RRYRQHGSSGWRSPALASRKHFLXICVEPGSTPRCPSGTPSMS 177
           +  +N   G+    R + +H S+ + +   ++  +     V+PGS PR  S + S+S
Sbjct: 286 INSFNPRNGSIKRWRSFSRHSSATYSNSPSSNFSNMKSSEVDPGSPPRIKSRSYSLS 342


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 194 RLDSAEYCQAQHKXTGSVSVRREQESAIRWTHAAG 298
           RLD    C    K   S++  R  +  +RW  ++G
Sbjct: 301 RLDLQGDCTCIFKNRSSIASSRTMDDVVRWLFSSG 335


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 197 LDSAEYCQAQHKXTGSVSVRREQE 268
           LDS++YC +  +  GS+ +  EQE
Sbjct: 274 LDSSKYCVSYCQVRGSIPIFWEQE 297


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 218 GSTPRCPSGTPSMSPQKGSPDTSA 147
           GSTP   S T  +SP +G P TSA
Sbjct: 295 GSTPA--SATVPISPARGFPTTSA 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,198,459
Number of Sequences: 5004
Number of extensions: 18315
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)