Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0827
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570...    29   1.1  
09_06_0280 + 22010270-22011407,22011890-22013097                       28   1.9  
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737...    27   3.3  
07_01_0855 - 7064842-7064886,7065616-7065698,7068419-7068698           27   5.7  
04_04_0419 + 25086456-25086768,25087302-25087369,25087458-250876...    27   5.7  
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578...    26   7.6  
04_01_0357 + 4667796-4667901,4668722-4668816                           26   7.6  
03_04_0220 - 18741485-18741915,18742007-18742190                       26   7.6  

>04_03_0925 -
           20856628-20856690,20856786-20856845,20856924-20857001,
           20857127-20857192,20857542-20858675,20858991-20860283
          Length = 897

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 296 RQHGSSGWRSPALASRKHFLXICVEPGSTPRCPSGTPSMSPQKGSPDTSA 147
           ++ GS+   +PA A+RK         G  PR P GT +    +  P T+A
Sbjct: 76  KESGSTSAAAPAAATRKASGVAAATTGVLPRKPPGTTAPVAARNIPATTA 125


>09_06_0280 + 22010270-22011407,22011890-22013097
          Length = 781

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 185 MEFRLDSAEYCQAQHKXTGSVSVRREQESAIRWTHAAGXG 304
           +E  L+S      Q +   SVS ++ +E  + W+HA   G
Sbjct: 719 VEMTLESIRSSSLQQEVLHSVSTKKSKELHVSWSHAISEG 758


>01_06_1496 +
           37772838-37772935,37773039-37773243,37773649-37773742,
           37773830-37773933,37774370-37774618,37774706-37774819,
           37775010-37775093,37775292-37775462,37775544-37775657,
           37775751-37775894
          Length = 458

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -2

Query: 341 GMWNSARGAXSHRRYRQHGSSGWRSPALASRKHFLXICVEPGSTPRCPSGTPSMSPQKG 165
           GMW+  R    +   +    +GWR   LA+ KHF+  C +  S  +  SG  S+S + G
Sbjct: 275 GMWD--RTLTVNGFSKAFAMTGWRLGYLAAPKHFVAACGKIQS--QFTSGASSISQKAG 329


>07_01_0855 - 7064842-7064886,7065616-7065698,7068419-7068698
          Length = 135

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 188 EFRLDSAEYCQAQHKXTGSVSVRREQESAIRWTHAAGXGGDXXHLA 325
           E RLD +E+C+ Q +  G V V  +    +R T      G+   LA
Sbjct: 9   EARLDGSEWCRRQ-REEGCVEVADDAMGGLRLTDEGHPAGNEGRLA 53


>04_04_0419 +
           25086456-25086768,25087302-25087369,25087458-25087681,
           25087929-25088012,25088593-25088806,25089252-25089428,
           25089526-25089645,25089865-25089991,25090104-25090130,
           25090526-25091007
          Length = 611

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 260 LASRKHFLXICVEPGSTPRCPSGTPSMSPQKGSPDTS 150
           LA R H   I VE      C +  P  + + GSP TS
Sbjct: 515 LAQRMHAAQIAVEYKLALHCAATLPMSNDRAGSPSTS 551


>12_02_0017 -
           12357029-12357070,12357434-12357503,12357722-12357852,
           12358836-12358882,12359762-12360044,12360547-12362413,
           12362454-12362665
          Length = 883

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -2

Query: 224 EPGSTPRCPS--GTPSMSPQKGSPDTSA 147
           EP  TPR PS   TPS SP       SA
Sbjct: 72  EPAPTPRAPSRHATPSSSPPSTPSSASA 99


>04_01_0357 + 4667796-4667901,4668722-4668816
          Length = 66

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 287 HAAGXGGDXXHLAH 328
           HAAG GGD  H+ H
Sbjct: 29  HAAGSGGDLGHMGH 42


>03_04_0220 - 18741485-18741915,18742007-18742190
          Length = 204

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
 Frame = -2

Query: 239 LXICVEPGSTP----RCPS---GTPSMSPQKGSPDTSARQNKV 132
           L +C+ PGS P    R P+   GTPSMS  +    T   ++ V
Sbjct: 156 LGLCLSPGSPPAVGERKPALRPGTPSMSSDESGTTTGGERDPV 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,459,210
Number of Sequences: 37544
Number of extensions: 144342
Number of successful extensions: 485
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)