BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0827 (357 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.068 SB_14513| Best HMM Match : rve (HMM E-Value=0.14) 27 3.4 SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 27 4.5 >SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1512 Score = 33.1 bits (72), Expect = 0.068 Identities = 20/62 (32%), Positives = 32/62 (51%) Frame = -2 Query: 329 SARGAXSHRRYRQHGSSGWRSPALASRKHFLXICVEPGSTPRCPSGTPSMSPQKGSPDTS 150 S R + R R+ S R P A R+H+ + + S+P P+ + SP++ SPD+S Sbjct: 1121 SPRESLQQRTPRRSHSEVSRLPVKADRQHYSSLDL---SSPETPTSSDFPSPRRESPDSS 1177 Query: 149 AR 144 R Sbjct: 1178 RR 1179 >SB_14513| Best HMM Match : rve (HMM E-Value=0.14) Length = 1101 Score = 27.5 bits (58), Expect = 3.4 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Frame = -2 Query: 332 NSARGAXSHRRYRQHGSSGWRSPALASRKHFLXI-CVEPGSTPRCPSGTPSMSPQKGSPD 156 +SAR A + R GS+ RS ASR + I V G +G P +S + + Sbjct: 670 DSARKAAAGGRTADQGSTACRSGDSASRSRTMQISAVIHGVNRHLDTGAPPISARPCTAM 729 Query: 155 TSARQNKV 132 ++ +Q+K+ Sbjct: 730 STTQQSKI 737 >SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) Length = 287 Score = 27.1 bits (57), Expect = 4.5 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +3 Query: 270 APSAGPMLPVXAVTXXTSRTVPHTYPSSV 356 AP+ P P A R+VP T PSSV Sbjct: 112 APAPAPAAPSAAAAPAPVRSVPSTSPSSV 140 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,627,287 Number of Sequences: 59808 Number of extensions: 159787 Number of successful extensions: 450 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 407 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 449 length of database: 16,821,457 effective HSP length: 73 effective length of database: 12,455,473 effective search space used: 560496285 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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