Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0827
         (357 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.068
SB_14513| Best HMM Match : rve (HMM E-Value=0.14)                      27   3.4  
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               27   4.5  

>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1512

 Score = 33.1 bits (72), Expect = 0.068
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = -2

Query: 329  SARGAXSHRRYRQHGSSGWRSPALASRKHFLXICVEPGSTPRCPSGTPSMSPQKGSPDTS 150
            S R +   R  R+  S   R P  A R+H+  + +   S+P  P+ +   SP++ SPD+S
Sbjct: 1121 SPRESLQQRTPRRSHSEVSRLPVKADRQHYSSLDL---SSPETPTSSDFPSPRRESPDSS 1177

Query: 149  AR 144
             R
Sbjct: 1178 RR 1179


>SB_14513| Best HMM Match : rve (HMM E-Value=0.14)
          Length = 1101

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 332 NSARGAXSHRRYRQHGSSGWRSPALASRKHFLXI-CVEPGSTPRCPSGTPSMSPQKGSPD 156
           +SAR A +  R    GS+  RS   ASR   + I  V  G      +G P +S +  +  
Sbjct: 670 DSARKAAAGGRTADQGSTACRSGDSASRSRTMQISAVIHGVNRHLDTGAPPISARPCTAM 729

Query: 155 TSARQNKV 132
           ++ +Q+K+
Sbjct: 730 STTQQSKI 737


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 270 APSAGPMLPVXAVTXXTSRTVPHTYPSSV 356
           AP+  P  P  A      R+VP T PSSV
Sbjct: 112 APAPAPAAPSAAAAPAPVRSVPSTSPSSV 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,627,287
Number of Sequences: 59808
Number of extensions: 159787
Number of successful extensions: 450
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)