Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0827
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical pr...    28   1.7  
U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical pr...    28   1.7  
Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    27   5.1  
U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical pr...    26   8.9  
AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical ...    26   8.9  

>Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical
           protein F54B11.1 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = -2

Query: 323 RGAXSHRRYRQHGSSGWRSP-----ALASRKHFLXICVEPGSTPRCPSGTPSMSPQKGSP 159
           RG  +  R ++  ++GWRSP      +AS       C  PG  P  PSG P    + G P
Sbjct: 104 RGYNTGYRSQKKKNNGWRSPPRSGIVVASEGGTCMGCCNPG--PPGPSGHPGKPGRPGRP 161


>U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical
           protein AH9.3 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 224 EPGSTPRCPSGTPSMSPQKGSPDTSARQNKV 132
           E GS+P+  + T    P+K S D +A +N+V
Sbjct: 44  EAGSSPKATTTTDGEVPEKDSADENAEKNQV 74


>Z71262-8|CAA95812.1|  302|Caenorhabditis elegans Hypothetical
           protein F22D6.10 protein.
          Length = 302

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 224 EPGSTPRCPSGTPSMSPQKGSPDTSARQNK 135
           + GST  CP+G P      G+P  + R  +
Sbjct: 133 QDGSTSTCPAGPPGEQGPDGAPGEAGRDGQ 162


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -3

Query: 322 EVXXVTAXTGSMGPADGALLLSPHGNTSCXFVLSLAVLRAVQAELH 185
           EV      T   G   G L +SP GNTS    LS A++    A LH
Sbjct: 594 EVQLEVESTDKNGNFVGYLYVSPDGNTSRAINLSEALVENGLASLH 639


>U70852-2|AAK29821.1| 1231|Caenorhabditis elegans Hypothetical protein
            F45E4.3a protein.
          Length = 1231

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -3

Query: 259  SPHGNTSCXFVLSLAVLRAVQAELHQCXHRRDLQILPLGRIKL 131
            +P  N    + ++   L  +  E   C ++RD+  LPLG +++
Sbjct: 1087 APEWNQVLEYQVAPHTLNTMFLEFTVCDYQRDVDDLPLGNVQI 1129


>AF036688-8|AAB88314.2|  482|Caenorhabditis elegans Hypothetical
           protein C24D10.1 protein.
          Length = 482

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 277 DGALLLSPHGNTSCXFVLSLAV 212
           D A+++SPHG     + L+LAV
Sbjct: 367 DNAMIISPHGAGRAGYFLALAV 388


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,918,530
Number of Sequences: 27780
Number of extensions: 117305
Number of successful extensions: 409
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)