Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0827
         (357 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g15430.1 68415.m01765 DNA-directed RNA polymerase II 36 kDa p...    28   1.6  
At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase / x...    27   4.9  
At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1) domain...    26   6.4  
At5g38560.1 68418.m04662 protein kinase family protein contains ...    26   8.5  
At2g43970.2 68415.m05468 La domain-containing protein contains P...    26   8.5  
At2g43970.1 68415.m05467 La domain-containing protein contains P...    26   8.5  
At2g20620.1 68415.m02415 expressed protein contains Pfam profile...    26   8.5  

>At2g15430.1 68415.m01765 DNA-directed RNA polymerase II 36 kDa
           polypeptide A / RNA polymerase II subunit 3 (RPB36A)
           identical to SP|Q39211 DNA-directed RNA polymerase II 36
           kDa polypeptide A (EC 2.7.7.6) (RNA polymerase II
           subunit 3) {Arabidopsis thaliana}
          Length = 319

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +2

Query: 155 YLEIPSVXTLMEFRLDSAEYCQAQHKXTGSVSVRREQESAIRWTHAAGXGGD 310
           Y   P+V T ++F +DS+    ++HK    V +RR QE  +R     G G D
Sbjct: 126 YSADPTV-TPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKD 176


>At5g57550.1 68418.m07190 xyloglucan:xyloglucosyl transferase /
           xyloglucan endotransglycosylase / endo-xyloglucan
           transferase (XTR3) identical to endoxyloglucan
           transferase GI:5533317 from [Arabidopsis thaliana]
          Length = 284

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 272 RSPALASRKHF-LXICVEPGSTPRCPSGTPSMSPQK 168
           ++P  AS ++F    CV  G    CP+G+P    Q+
Sbjct: 211 KAPFTASYRNFRADACVSSGGRSSCPAGSPRWFSQR 246


>At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein  Pfam profile PF00564: PB1
           domain
          Length = 720

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 307 TAXTGSMGPADGALLLSPHGNTSCXFVL 224
           T  TG + P+D + LLS H N    ++L
Sbjct: 462 TVVTGMINPSDPSTLLSQHQNQDPAYIL 489


>At5g38560.1 68418.m04662 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 681

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -2

Query: 221 PGSTPRCPSGTPSMSPQKGSPDT 153
           PG TP  P  TP  SP K SP T
Sbjct: 142 PGETPSPPGETP--SPPKPSPST 162


>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 529

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -2

Query: 332 NSARGAXSHRRYRQHGSSGWRSPALASRKHFLXICVEPGSTPRCPSGTPSMSPQKGSP 159
           ++ RG   H  + Q G+    +P     +  +     PG  PR P GT   S  +G P
Sbjct: 468 HNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPG--PRMPDGTRGFSMGRGKP 523


>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 545

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -2

Query: 332 NSARGAXSHRRYRQHGSSGWRSPALASRKHFLXICVEPGSTPRCPSGTPSMSPQKGSP 159
           ++ RG   H  + Q G+    +P     +  +     PG  PR P GT   S  +G P
Sbjct: 484 HNGRGNHHHHHHHQVGTQPSNNPMNNMEQPGMGKQQPPG--PRMPDGTRGFSMGRGKP 539


>At2g20620.1 68415.m02415 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 286

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 109 NNFSFVLLTLFCLAEVSGDPFC-GDIDGVPLGQRGVLP 219
           NN    L+T FC  E SGD     D +GV +   GV+P
Sbjct: 132 NNEKLRLVTTFCSLEGSGDKGSQWDPNGVDVLYTGVMP 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,447,509
Number of Sequences: 28952
Number of extensions: 103616
Number of successful extensions: 257
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)