Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0826
         (653 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5Z2U7 Cluster: Putative uncharacterized protein; n=1; ...    35   1.5  
UniRef50_Q5KD40 Cluster: Expressed protein; n=3; Filobasidiella ...    35   2.0  
UniRef50_Q8NJ10 Cluster: Related to GCN4 translational repressor...    34   3.4  
UniRef50_Q9RC22 Cluster: MrsM protein; n=2; cellular organisms|R...    33   6.0  

>UniRef50_A5Z2U7 Cluster: Putative uncharacterized protein; n=1;
           Caenorhabditis elegans|Rep: Putative uncharacterized
           protein - Caenorhabditis elegans
          Length = 127

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 238 SSSNAPFAPASVPVARAIPCSSNVFSKIAPTNQLPCPRPYISSSTVDNFI 89
           S+S   F+   +   RA P +SN+ SK A TN+   PR +++    + FI
Sbjct: 54  STSADKFSIGDIDFLRATPVNSNIVSKFAATNESSTPRIFVTEKNNNLFI 103


>UniRef50_Q5KD40 Cluster: Expressed protein; n=3; Filobasidiella
           neoformans|Rep: Expressed protein - Cryptococcus
           neoformans (Filobasidiella neoformans)
          Length = 979

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +3

Query: 192 RATGTDAGANGALLDEHMAPMPHTIHRCYEVERAYPFKQFIFSENEHLPST 344
           R TG+D+ ++ A +    A  PH +   +  + A+P  Q I  EN H PS+
Sbjct: 50  RNTGSDSSSSAATI----AARPHGMFPSFRFQNAHPLSQSILPENSHSPSS 96


>UniRef50_Q8NJ10 Cluster: Related to GCN4 translational repressor
           GCD14 protein; n=5; Pezizomycotina|Rep: Related to GCN4
           translational repressor GCD14 protein - Neurospora
           crassa
          Length = 497

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 29/100 (29%), Positives = 44/100 (44%)
 Frame = -2

Query: 523 FYGVFLPPETDQHVDYLEVGHWRPWTTAIPQLSRRFFHTSLEEGMKTSCVAWWAALYPRV 344
           + G FL        D + +   +PW  A+P LSRR   T  +EG  T+   W + L P+ 
Sbjct: 237 YNGGFLIDGKSPEADAIFLDLPKPWE-ALPHLSRRKPQTQAKEGEDTA-AEWVSPLNPKK 294

Query: 343 VEGRCSFSLKINCLNG*ARSTS*QRCMVWGMGAICSSSNA 224
               C+FS    C+    R+ S  R +    G+   S+ A
Sbjct: 295 AVHICTFS---PCIEQVTRTVSAMRRLGSPTGSFTPSATA 331


>UniRef50_Q9RC22 Cluster: MrsM protein; n=2; cellular organisms|Rep:
           MrsM protein - Bacillus sp. (strain HIL-Y85/54728)
          Length = 1062

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = -2

Query: 622 INQIIFSHSTKLLYKHSLQPAVIISIINS 536
           + ++++SHSTK L K  L P+VI  ++N+
Sbjct: 127 LEEVLYSHSTKSLIKEELSPSVIDDLLNN 155


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,603,277
Number of Sequences: 1657284
Number of extensions: 14650159
Number of successful extensions: 35107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35087
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49173558301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)