Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0826
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    25   0.41 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    24   0.95 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.2  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.9  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 397 LQAKYERISGLAAVLLLSMDASD 465
           L+AKY + +GLA V + S+D  D
Sbjct: 324 LKAKYAKDNGLAGVAVWSIDTDD 346


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 24.2 bits (50), Expect = 0.95
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 512 NTVKSKGKTVYYAYDNCRLQAMFV 583
           NT    G      YD+C+LQA  V
Sbjct: 122 NTAAPNGHQTQVVYDSCKLQAAAV 145


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 412 ERISGLAAVLLLSMDASDQPLSNPRADQFPEV 507
           E   GL   LL S  AS  PL+NP+  Q+ E+
Sbjct: 414 ELAPGLVGPLLTSALASWSPLTNPK--QYMEI 443


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 512 NTVKSKGKTVYYAYDNCRLQAMFV 583
           NT    G      Y +C+LQA  V
Sbjct: 120 NTAAPNGHQTQVVYASCKLQAAAV 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,755
Number of Sequences: 336
Number of extensions: 3806
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)