Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0826
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.0
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 28 1.4
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 27 1.8
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 3.1
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 4.1
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 26 4.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.2
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 25 7.2
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 25 9.5
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.0
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Frame = -2
Query: 238 SSSNAPFAPASVPVARA----IPCSSNVFSKIAPTNQLPCPRPYISSSTV 101
SSS AP AP VP + IP S AP+ P P+P +++ V
Sbjct: 1055 SSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPV 1104
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 286 NVPIRSNNLFLAKMN-ICLQQHEDKAPPTTRHMRFSFLLQAKYERISG 426
N+PI + L+ +N H D+ +R R S ++ A ++R+SG
Sbjct: 112 NIPISYRDNLLSHVNGYARSMHNDRKVRASRSRRISGMILAHFKRLSG 159
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -2
Query: 232 SNAPFAPASVPVARAIPCSSNVFSK-IAPTNQLPCPRPYIS 113
++A F P+S+P + +I SSN F K AP N+ P P+I+
Sbjct: 236 ADAAFKPSSLP-STSISASSNAFYKPAAPDNERPLD-PHIT 274
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -2
Query: 238 SSSNAPFAPASVPVARAIPCSSNVFSKIAPTNQLPCPRPYISSST 104
SS N PF+P + RA P + S TN P I++ T
Sbjct: 676 SSQNLPFSPMKISPIRASPVKTIPSSPSPTTNIFSAPLNNITNCT 720
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -2
Query: 238 SSSNAPFAPASVPVARAI--PCSSNVFSKIAPTNQLPCPRPYISSSTVDNFI 89
SS P PA P A + P S+ K +N P P +SS + DN I
Sbjct: 248 SSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSSKSTDNII 299
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/77 (20%), Positives = 32/77 (41%)
Frame = +1
Query: 292 PIRSNNLFLAKMNICLQQHEDKAPPTTRHMRFSFLLQAKYERISGLAAVLLLSMDASDQP 471
P S+ + K + ++H +K P R +S + KY+ SG+ + + +
Sbjct: 125 PQESSEKYSKKSSTRKKEHFNKKPSFPRDTEYSHIYNMKYDPRSGI-GIRVKRQEPESLK 183
Query: 472 LSNPRADQFPEVKKHRK 522
N +D P+ +K
Sbjct: 184 KENNNSDYLPKSAMKQK 200
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 569 AACSYHKHNKQFYLSILRCFF 507
AAC+YH+ N+ + L I++ F
Sbjct: 1717 AACNYHQVNEDWRLKIIKFMF 1737
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/84 (20%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Frame = -2
Query: 583 YKHSLQPAVIISIINSFTFRFYGVFLPPETDQHVDYLEVGHWR----PWTTAIPQLSRRF 416
Y ++L+ ++ ++++ + ++PP + + EV R +IP++ +
Sbjct: 358 YSYTLRRNYLLYAMDTYLPKSVCSYIPPVAGMFI-WFEVDKSRYIHADKNESIPEIESKI 416
Query: 415 FHTSLEEGMKTSCVAWWAALYPRV 344
++EEG+ +C W+ + PRV
Sbjct: 417 HAEAVEEGVNLACGNWF-VVDPRV 439
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 124 DEDMEVDLWELFLRKHLKSMEWH 192
D VDLW LF + +K++ W+
Sbjct: 17 DHPFGVDLWHLFEQLSIKTIGWN 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,751
Number of Sequences: 5004
Number of extensions: 63583
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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