Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0826
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0633 + 20120560-20123464,20123608-20123672                       31   0.80 
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206...    31   1.1  
03_02_0488 - 8824980-8825267,8825364-8827775                           29   3.2  
05_01_0397 - 3129679-3130144,3130655-3131104,3132215-3132273,313...    28   5.6  
12_01_1073 + 11135853-11137388,11137627-11137846,11137990-111381...    28   7.5  
03_06_0340 + 33252677-33252864,33253086-33254442,33254565-332546...    28   7.5  
01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942           27   9.9  

>07_03_0633 + 20120560-20123464,20123608-20123672
          Length = 989

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -1

Query: 527 SILRCFFTSGN*SARGLLRGWSLASMDNSNTAAKPEILSYFA*RRNENLMCRVVGGALS 351
           ++ +  ++  N     LLRGW   S   S T  + +I+  FA  + ENL  + V    S
Sbjct: 195 TLAQLIYSDPNVKEAFLLRGWVFTSRSCSRTGLEQDIIESFASEQEENLQRKSVSSESS 253


>03_02_0910 +
           12317493-12317960,12319678-12319734,12320592-12320666,
           12321219-12321299,12321472-12321546,12321818-12321862,
           12321975-12322064,12322153-12322254,12322366-12322420,
           12324966-12325027,12325521-12325555,12325877-12326115,
           12326219-12328035
          Length = 1066

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 244 ICSSSNAPFAPASVPVARAIPCSSNVFSKIAPTNQLPCPRP 122
           +CS +  P  PA  P     P   N+  K APT + PCP P
Sbjct: 1   MCSCARFPH-PALQPAPAPAPPPPNLKPKPAPTTRGPCPSP 40


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 258 HTIHRCYEVERAYPFKQFIFSENEHLPSTTRG*SAAHHATHE--VFIPSSSE 407
           H   RCY+ E+ +  ++F+   +E LPS+    S   H + E   FI + S+
Sbjct: 636 HRKSRCYQAEKNHLHREFVLVGSEQLPSSEE--SGDSHVSREFAAFISAVSQ 685


>05_01_0397 -
           3129679-3130144,3130655-3131104,3132215-3132273,
           3133136-3133305,3134655-3134771,3134980-3135166
          Length = 482

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = +3

Query: 228 LLDEHMAPM---PHTIHRCYEVERAYPFKQFIFSENEHLPSTTRG*SAAHHATHEVFIPS 398
           +  EH+A +   P   H C  V   +P      S + H+P  T    A H   H +  PS
Sbjct: 200 MFTEHVAAVSSAPGAAHPCPYVAYLHPLPSLASSSSSHVPERTMDGPAYHDPWHPLAGPS 259


>12_01_1073 + 11135853-11137388,11137627-11137846,11137990-11138178,
            11138257-11138457,11138547-11139246,11163479-11164106
          Length = 1157

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 565  PAVIISIINSFTFRFYGVFLPPETDQHVDYLEVGHWRPWTTAIPQL 428
            P  II  I+S  +R     LPP    H D   VG W+P+T   P++
Sbjct: 1042 PYQIIECISSVAYRRC---LPPGAHLH-DVFHVGLWKPFTGVPPEV 1083


>03_06_0340 +
           33252677-33252864,33253086-33254442,33254565-33254667,
           33256081-33256171,33257208-33257300,33258316-33258471,
           33258583-33258655
          Length = 686

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 463 HWRPWTTAIPQLSRRFFHTSLEEGMKT 383
           HW+P    + +   RFFH+SL++ M+T
Sbjct: 568 HWQPNRQQLTEF--RFFHSSLQQSMET 592


>01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942
          Length = 1020

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 292 PIRSNNLFLAKMNICLQQHEDKAPPTTRHMRFSFLLQAKYERISGLAAVLLLS 450
           P   N  FL ++N+   Q   + PP    +R   +L   +  ISG+    L S
Sbjct: 86  PAVGNLTFLRRLNLSSNQLHGEIPPAVGRLRRLLVLDMDHNSISGVIPANLSS 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,914,956
Number of Sequences: 37544
Number of extensions: 415309
Number of successful extensions: 972
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)