Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0826
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)                   31   0.62 
SB_9360| Best HMM Match : CUB (HMM E-Value=2.5e-35)                    29   2.5  
SB_54077| Best HMM Match : SRF-TF (HMM E-Value=4.4)                    29   4.4  
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)           28   7.6  
SB_30924| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)                    28   7.6  
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)                      28   7.6  

>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
          Length = 2153

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 141 NFHVLVRIFHPRPLTILYKHSRSEQL 64
           N    +R FHPRPLT L K + S+QL
Sbjct: 474 NSQKCLRTFHPRPLTFLSKEALSKQL 499


>SB_9360| Best HMM Match : CUB (HMM E-Value=2.5e-35)
          Length = 275

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 509 KNTVKSKGKTVYYAYDNCRLQAMFVK*FGTVREYYLIYD 625
           K+T  ++G   YY+ DN  L       +GT + +YL Y+
Sbjct: 235 KSTQAAEGNKTYYSKDNFALVWFQSNGYGTAKGFYLTYE 273


>SB_54077| Best HMM Match : SRF-TF (HMM E-Value=4.4)
          Length = 344

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 637 SHKIIINQIIFSHSTKLLYKHS 572
           SH +++ Q+IF+   KLL KHS
Sbjct: 80  SHDLVMVQVIFTQERKLLMKHS 101


>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
          Length = 506

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 274 QRCMVWGMGAICSSSNAP--FAPASVPVARAIPCSSNVFSKI 155
           Q+C + G G + S  N P     ASVP+     C++   +KI
Sbjct: 74  QKCWITGWGTLASGGNQPNKLMQASVPLVSQSKCNTAYPNKI 115


>SB_30924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 89

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
 Frame = -2

Query: 268 CMVWGMG---AICSSSNAPFAPASVPVA 194
           C+VWG+G   +  SSS++ F P+++P A
Sbjct: 40  CVVWGVGRKPSSSSSSDSSFPPSTMPYA 67


>SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)
          Length = 708

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/51 (25%), Positives = 20/51 (39%)
 Frame = -2

Query: 259 WGMGAICSSSNAPFAPASVPVARAIPCSSNVFSKIAPTNQLPCPRPYISSS 107
           W   + CS S    +     + R +PC S    +  P  Q  CP  ++  S
Sbjct: 493 WNGWSTCSVSCGSGSKMRARICRKLPCQSRDLYQTKPCAQDVCPSDWVKES 543


>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 697

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 625 IINQIIFSHSTKLLYKHSLQPAVIISII 542
           +I+Q+ F+H   LLY HS   A I++I+
Sbjct: 282 LISQV-FTHGKPLLYTHSTAAAAIVAIV 308


>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 530

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 274 QRCMVWGMGAICSSSNAP--FAPASVPVARAIPCSSNVFSKI 155
           Q+C + G G + S  N P     ASVP+     C++   +KI
Sbjct: 418 QKCWITGWGTLASGGNQPNKLMQASVPLVSQSKCNTAYPNKI 459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,765,473
Number of Sequences: 59808
Number of extensions: 477551
Number of successful extensions: 990
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)