BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0826 (653 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 31 0.62 SB_9360| Best HMM Match : CUB (HMM E-Value=2.5e-35) 29 2.5 SB_54077| Best HMM Match : SRF-TF (HMM E-Value=4.4) 29 4.4 SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 28 7.6 SB_30924| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6 SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18) 28 7.6 SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6 SB_4906| Best HMM Match : Trypsin (HMM E-Value=0) 28 7.6 >SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) Length = 2153 Score = 31.5 bits (68), Expect = 0.62 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = -3 Query: 141 NFHVLVRIFHPRPLTILYKHSRSEQL 64 N +R FHPRPLT L K + S+QL Sbjct: 474 NSQKCLRTFHPRPLTFLSKEALSKQL 499 >SB_9360| Best HMM Match : CUB (HMM E-Value=2.5e-35) Length = 275 Score = 29.5 bits (63), Expect = 2.5 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +2 Query: 509 KNTVKSKGKTVYYAYDNCRLQAMFVK*FGTVREYYLIYD 625 K+T ++G YY+ DN L +GT + +YL Y+ Sbjct: 235 KSTQAAEGNKTYYSKDNFALVWFQSNGYGTAKGFYLTYE 273 >SB_54077| Best HMM Match : SRF-TF (HMM E-Value=4.4) Length = 344 Score = 28.7 bits (61), Expect = 4.4 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = -2 Query: 637 SHKIIINQIIFSHSTKLLYKHS 572 SH +++ Q+IF+ KLL KHS Sbjct: 80 SHDLVMVQVIFTQERKLLMKHS 101 >SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) Length = 506 Score = 27.9 bits (59), Expect = 7.6 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = -2 Query: 274 QRCMVWGMGAICSSSNAP--FAPASVPVARAIPCSSNVFSKI 155 Q+C + G G + S N P ASVP+ C++ +KI Sbjct: 74 QKCWITGWGTLASGGNQPNKLMQASVPLVSQSKCNTAYPNKI 115 >SB_30924| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 89 Score = 27.9 bits (59), Expect = 7.6 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 3/28 (10%) Frame = -2 Query: 268 CMVWGMG---AICSSSNAPFAPASVPVA 194 C+VWG+G + SSS++ F P+++P A Sbjct: 40 CVVWGVGRKPSSSSSSDSSFPPSTMPYA 67 >SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18) Length = 708 Score = 27.9 bits (59), Expect = 7.6 Identities = 13/51 (25%), Positives = 20/51 (39%) Frame = -2 Query: 259 WGMGAICSSSNAPFAPASVPVARAIPCSSNVFSKIAPTNQLPCPRPYISSS 107 W + CS S + + R +PC S + P Q CP ++ S Sbjct: 493 WNGWSTCSVSCGSGSKMRARICRKLPCQSRDLYQTKPCAQDVCPSDWVKES 543 >SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 697 Score = 27.9 bits (59), Expect = 7.6 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -2 Query: 625 IINQIIFSHSTKLLYKHSLQPAVIISII 542 +I+Q+ F+H LLY HS A I++I+ Sbjct: 282 LISQV-FTHGKPLLYTHSTAAAAIVAIV 308 >SB_4906| Best HMM Match : Trypsin (HMM E-Value=0) Length = 530 Score = 27.9 bits (59), Expect = 7.6 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%) Frame = -2 Query: 274 QRCMVWGMGAICSSSNAP--FAPASVPVARAIPCSSNVFSKI 155 Q+C + G G + S N P ASVP+ C++ +KI Sbjct: 418 QKCWITGWGTLASGGNQPNKLMQASVPLVSQSKCNTAYPNKI 459 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,765,473 Number of Sequences: 59808 Number of extensions: 477551 Number of successful extensions: 990 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 873 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 984 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1669334250 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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