Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0826
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.64 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   4.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   4.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   4.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.9  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   7.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 289 VPIRSNNLFLAKMNICLQQHEDKAPPTTRHMRFSFLLQAKYERISGLAAVLLLSMDASDQ 468
           V I  NN   + +N+   +     P    +  +SF   AKYE  SG+ +   +++D  D+
Sbjct: 84  VTIERNNGVPSSLNVVTNKKGKGGPLLRPYPDWSF---AKYEDCSGIVSAFKIAVDKFDR 140


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 319 AKMNICLQQHEDKAPPTTRHMRFSFLLQAKYERISGLAAVLLLSMDASDQ 468
           + +N+  ++  D  P    +  +SF   AKY+  SG+ +   L++D  D+
Sbjct: 88  SSLNVISKKVGDGGPLLQPYPDWSF---AKYDDCSGIVSASKLAIDKCDR 134


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 319 AKMNICLQQHEDKAPPTTRHMRFSFLLQAKYERISGLAAVLLLSMDASDQ 468
           + +N+  ++  D  P    +  +SF   AKY+  SG+ +   L++D  D+
Sbjct: 88  SSLNVISKKVGDGGPLLQPYPDWSF---AKYDDCSGIVSASKLAIDKCDR 134


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 319 AKMNICLQQHEDKAPPTTRHMRFSFLLQAKYERISGLAAVLLLSMDASDQ 468
           + +N+  ++  D  P    +  +SF   AKY+  SG+ +   L++D  D+
Sbjct: 88  SSLNVISKKVGDGGPLLQPYPDWSF---AKYDDCSGIVSASKLAIDKCDR 134


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 72  RFVNVYIKLSTVED 113
           RF N+  KLST+ED
Sbjct: 555 RFYNLLGKLSTIED 568


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +2

Query: 83  CLYKIVNGRG*NIRT 127
           C+++  NGRG  ++T
Sbjct: 498 CIFRTANGRGWGVKT 512


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 288 VLLHNNDVWYGAWEPYV 238
           V L    +W+ AW PY+
Sbjct: 279 VALMTISLWFMAWTPYL 295


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 288 VLLHNNDVWYGAWEPYV 238
           V L    +W+ AW PY+
Sbjct: 29  VALMTISLWFMAWTPYL 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,069
Number of Sequences: 438
Number of extensions: 4485
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)