Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0826
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62660.1 68414.m07071 beta-fructosidase (BFRUCT3) / beta-fruc...    29   2.7  
At5g48940.1 68418.m06054 leucine-rich repeat transmembrane prote...    27   8.2  
At5g22140.2 68418.m02577 pyridine nucleotide-disulphide oxidored...    27   8.2  
At5g22140.1 68418.m02578 pyridine nucleotide-disulphide oxidored...    27   8.2  

>At1g62660.1 68414.m07071 beta-fructosidase (BFRUCT3) /
           beta-fructofuranosidase / invertase, vacuolar identical
           to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis
           thaliana]; supported by full-length cDNA GI:14517549;
           identical to cDNA  Beta-fructosidase GI:3115854
          Length = 648

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 442 LLSMDASDQPLSNPRADQFPEVKKHRKIE 528
           LL + +   PLS  R+DQ PE ++ R I+
Sbjct: 7   LLPVTSLQDPLSESRSDQIPETRRRRPIK 35


>At5g48940.1 68418.m06054 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1135

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 172 NVFSKIAPTNQLPCPRPYISSSTVDN 95
           +VFS   P++  PC  PYI+ S+ DN
Sbjct: 56  SVFSGWNPSDSDPCQWPYITCSSSDN 81


>At5g22140.2 68418.m02577 pyridine nucleotide-disulphide
           oxidoreductase family protein contains Pfam profile
           PF00070 Pyridine nucleotide-disulphide oxidoreductase
           domain
          Length = 311

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 364 PTTRHMRFSFLLQAKYERISGLAAVLLLSMDASDQPLSNPRADQFPEVK 510
           P TR  + S   Q++YE+I    +VL++    S   L+   A  FPE K
Sbjct: 60  PKTRQEKLSHY-QSEYEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKK 107


>At5g22140.1 68418.m02578 pyridine nucleotide-disulphide
           oxidoreductase family protein contains Pfam profile
           PF00070 Pyridine nucleotide-disulphide oxidoreductase
           domain
          Length = 365

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 364 PTTRHMRFSFLLQAKYERISGLAAVLLLSMDASDQPLSNPRADQFPEVK 510
           P TR  + S   Q++YE+I    +VL++    S   L+   A  FPE K
Sbjct: 114 PKTRQEKLSHY-QSEYEKIKSSGSVLIVGGGPSGVELAAEIAVDFPEKK 161


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,118,540
Number of Sequences: 28952
Number of extensions: 328502
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)