Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0825
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35) 77 1e-14
SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 1e-11
SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 1e-09
SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35) 59 4e-09
SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0) 56 4e-08
SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 5e-08
SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43) 54 1e-07
SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0) 54 2e-07
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 51 1e-06
SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 46 3e-05
SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0) 46 4e-05
SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06) 38 0.007
SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10) 38 0.009
SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09) 37 0.016
SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_36515| Best HMM Match : UPF0126 (HMM E-Value=0.73) 29 5.5
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08) 29 5.5
SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_27852| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 7.2
>SB_46721| Best HMM Match : Tetraspannin (HMM E-Value=4e-35)
Length = 642
Score = 77.4 bits (182), Expect = 1e-14
Identities = 34/83 (40%), Positives = 52/83 (62%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 437
I+ I+AFFGCCGA KEN CM+I F + LLI+ E+A + GY+ ++ + ++ +
Sbjct: 416 IITIIAFFGCCGAWKENKCMLILFFILLLIVLGLEIAAAVLGYINKDKIQSDLTDDIIRN 475
Query: 438 ITQYPVDKNVQKTIDIIQTDLQC 506
I +YP KN + ID +Q D +C
Sbjct: 476 IKEYP--KNNKAAIDAMQMDFEC 496
>SB_1751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 69.3 bits (162), Expect = 3e-12
Identities = 33/83 (39%), Positives = 52/83 (62%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 437
I+ +VAF GCCGA KEN CM+I F FLL++ + E+ G Y +E+ + +++ +
Sbjct: 63 IIALVAFLGCCGAWKENKCMLICFFAFLLLLLILEIVGGALAYNNKDKIENRLDKDILKA 122
Query: 438 ITQYPVDKNVQKTIDIIQTDLQC 506
I YP KN +K+I+ +QT +C
Sbjct: 123 IENYP-GKN-EKSINDMQTKFKC 143
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/62 (40%), Positives = 33/62 (53%)
Frame = +1
Query: 70 MALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLII 249
MAL+G + VK L+ FN +F + GLI+ VGI A Y+ N Y P V+I
Sbjct: 1 MALQGSSNIVKILVIIFNFIFFLFGLILFGVGIWASTKLGAYVEIASVN-YATGPRVVIA 59
Query: 250 VG 255
VG
Sbjct: 60 VG 61
Score = 32.3 bits (70), Expect = 0.44
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +2
Query: 509 GINSPADW--ADH-GLP--IPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLVVHMKD 673
GI + DW +D+ GL +P +CC+ E + G+ T T + +GC K+ + +
Sbjct: 253 GITTYEDWKSSDNLGLTDNVPDSCCTTVEKDCGMGQRKTP--TRIYKEGCYMKIKKDIDN 310
Query: 674 IGMVLAGVGVGIAFGQLLGVIFA 742
+ + V + I QLL +IFA
Sbjct: 311 NLVAVGAVTITILVIQLLAMIFA 333
>SB_15887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 67.7 bits (158), Expect = 1e-11
Identities = 30/83 (36%), Positives = 53/83 (63%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 437
I+FI+ F GC GA++EN C++ FSV L IIF +LA+G+ ++ +E ++ L +
Sbjct: 56 IMFILGFSGCIGALRENICLLKFFSVVLAIIFFLQLALGVFVFVFQDKVEAVIVEKLQTA 115
Query: 438 ITQYPVDKNVQKTIDIIQTDLQC 506
+T+Y + ++Q ID +Q + +C
Sbjct: 116 VTKYRDNADLQNLIDGVQQEFKC 138
>SB_23554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +3
Query: 261 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 440
+ +V+FFGCCGA+KE+ C++ TF L II E+ GY+ +E+ + +++N +I
Sbjct: 336 IALVSFFGCCGAIKEHRCLLATFFALLFIILAVEITGTALGYVYRNKVEEQLGKDMNDTI 395
Query: 441 TQY--PVDKNVQKTIDIIQTDLQC 506
Y + + D IQ +C
Sbjct: 396 VSYGEKGKEGITDAYDAIQKKEKC 419
Score = 44.8 bits (101), Expect = 8e-05
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Frame = +2
Query: 440 YSISGRQERPEDY*YHTNRLAMLGINSPADW-------ADHGLPIPSTCCSAQEINDGVV 598
Y G++ + Y + GIN DW +H + +P +CC ++ G
Sbjct: 398 YGEKGKEGITDAYDAIQKKEKCCGINGFKDWQRSYYTKGNHSI-VPDSCCKT--VSKGCG 454
Query: 599 AACTENSTNFHSKGCLTKLVVHMKDIGMVLAGVGVGIAFGQLLGVIFA 742
EN + ++KGC + +KD +++ G+G+G+A Q+L +IFA
Sbjct: 455 INFKEN--DIYTKGCFDTVKTLLKDNLIIIGGIGIGVAVIQILAMIFA 500
>SB_31429| Best HMM Match : Tetraspannin (HMM E-Value=5.9e-35)
Length = 286
Score = 58.8 bits (136), Expect = 4e-09
Identities = 25/82 (30%), Positives = 45/82 (54%)
Frame = +3
Query: 261 VFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASI 440
++++ FFGC GA+KEN + ++ +F+ + +A G+ +++ L D R L +
Sbjct: 83 LYLIVFFGCVGALKENTLFLASYGIFIFCCLIPIIAAGVLAFLQREKLVDPKAR-LEDGL 141
Query: 441 TQYPVDKNVQKTIDIIQTDLQC 506
Y D + Q+ ID IQT +C
Sbjct: 142 KSYQQDSSKQEFIDFIQTRFKC 163
>SB_41644| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 252
Score = 55.6 bits (128), Expect = 4e-08
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 IIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNA 434
I+ IVAF CCGA+KE+ CM+ T+ + IF E+ + Y+ +E ++ ++ +
Sbjct: 67 IVTVIVAFLACCGALKESQCMLGTYFGLVTAIFCLEVTAIVLAYVYRERIEKNLHGDIRS 126
Query: 435 SITQYPVDKN--VQKTIDIIQTDLQC 506
++ +Y + + V + ID I D +C
Sbjct: 127 TMNEYHLSGHDAVTRAIDEIHRDFKC 152
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Frame = +1
Query: 70 MALEGGMSCVKYLMFCFNLLFAITGLIILIVGI-----RAEINSYPYMNFTDENFYKFAP 234
M+ + G C+K+++F FNLLF + G I +G+ + E+ + Y T YK AP
Sbjct: 1 MSTDWGFKCIKFMVFFFNLLFLLAGCAIFAIGVWIISSKDEV-AGDYSRLTGTINYKTAP 59
Query: 235 IVLIIVG 255
I+ I++G
Sbjct: 60 ILCIVIG 66
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Frame = +2
Query: 530 WAD-HGLPIPSTCC---SAQEINDGVVAACTENSTNFHSKGCLTKLVVHMKDIGMVLAGV 697
WA H +P +CC S + N+ + +++ T + +GC + ++ + V++G
Sbjct: 166 WAKTHPDMVPRSCCKDPSDSKCNENI----SKDPTKIYRRGCYMFVKKYLSNNLHVISGF 221
Query: 698 GVGIAFGQLLGVIFACC 748
G+ IA QL+G+IFA C
Sbjct: 222 GIWIAVIQLMGIIFATC 238
>SB_22250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 55.2 bits (127), Expect = 5e-08
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 437
++F++ FGC GA++EN C++ + II + G G+ LE V L +
Sbjct: 113 LLFVITIFGCIGALRENRCLLTAYIWMCGIILAGMIVCGGLGFYYKDVLETKVTAQLKDA 172
Query: 438 ITQY--PVDKNVQKTIDIIQTDLQC 506
I Y P ++ ID +QT+LQC
Sbjct: 173 IVLYRDPTKGDLHLIIDTVQTELQC 197
Score = 33.5 bits (73), Expect = 0.19
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 94 CVKYLMFCFNLLFAITGLIILIVGI 168
CVKY +F N++F + G +IL VGI
Sbjct: 59 CVKYSLFTINVIFWLAGAVILAVGI 83
>SB_26670| Best HMM Match : Tetraspannin (HMM E-Value=1.09301e-43)
Length = 211
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +3
Query: 255 IIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY 386
+I+ IV+FFGC GA KEN CM+ TF V LLI+ E+A + Y
Sbjct: 64 VIIAIVSFFGCLGAWKENRCMLGTFFVLLLILLTLEIAAAVLAY 107
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 82 GGMSCVKYLMFCFNLLFAITGLIILIVGIRAEI 180
G +K L+ FN+LF I G+ ++ VG AE+
Sbjct: 7 GAGRILKILVVFFNVLFFIFGIALIAVGAWAEV 39
>SB_31428| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 280
Score = 53.6 bits (123), Expect = 2e-07
Identities = 25/84 (29%), Positives = 43/84 (51%)
Frame = +3
Query: 255 IIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNA 434
I++F + FFGC GA++EN C + + + + + +A G Y + D ++ L
Sbjct: 86 ILMFFIGFFGCVGALRENTCFLTVYGTSVFLCLILLIACGAVAYTQ-KDKVQALKERLKQ 144
Query: 435 SITQYPVDKNVQKTIDIIQTDLQC 506
+ +Y D Q ID +QT L+C
Sbjct: 145 DLKKYLDDPLNQDLIDFMQTLLKC 168
Score = 32.7 bits (71), Expect = 0.33
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 94 CVKYLMFCFNLLFAITGLIILIVGI 168
C KY +F N++F I GL+++ VG+
Sbjct: 27 CTKYTLFFINVIFFILGLLVMTVGV 51
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 50.8 bits (116), Expect = 1e-06
Identities = 20/80 (25%), Positives = 43/80 (53%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 437
+V IV GC +KEN +++++ + L++IF+ E+A G+ + +++ + +
Sbjct: 69 LVIIVCVVGCVAVIKENRFILVSYLIMLVLIFILEIATGVVAVIYRSEISYELEVGIRGK 128
Query: 438 ITQYPVDKNVQKTIDIIQTD 497
+ +Y V K ID +Q +
Sbjct: 129 MNRYGFTDAVTKAIDDLQKE 148
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 590 GVVAACTENSTNFHSKGCLTKLVVHMKDIGMVLAGVGVGIAFGQ 721
G A T+ + +GC++KL D +L GV G+AF Q
Sbjct: 133 GFTDAVTKAIDDLQKEGCISKLEKFFLDNLAILVGVAFGLAFSQ 176
>SB_22249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 IIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNA 434
I++F++A GC GA++EN ++ + + + + ++ GIA YM +D V+ L
Sbjct: 90 ILLFLIATVGCIGALRENTILLAIYGGAVTLCLIFLVSAGIAVYMH----QDKVVEKLKD 145
Query: 435 SITQY--PVDKNVQKTIDIIQTDLQC 506
+ Y P +N Q ID +QT+L+C
Sbjct: 146 DLKHYRDPDKENFQFLIDRLQTNLKC 171
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +1
Query: 91 SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLII 249
+C+KY++F N++F + G++IL++G N D Y+ + ++LI+
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIGSYLMTEFKNAWNL-DSILYEPSVVILIV 88
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +2
Query: 551 IPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLVVHMKDIGMVLAGVGVGIAFGQLLG 730
+P +CC ++ + + T +GC V + +D +++ GV +G+A QL+G
Sbjct: 306 VPESCCKDTKVKSCNLEVLSHPETINSEQGCYGAAVKYFEDKLVIIGGVALGLAVFQLIG 365
Query: 731 VIFACC 748
+ F+CC
Sbjct: 366 IAFSCC 371
Score = 34.7 bits (76), Expect = 0.083
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFL 341
++ I+ F GCCGA+KE+ C++ T L
Sbjct: 226 LIAIIGFIGCCGALKEHTCLLKTIKTGL 253
>SB_31427| Best HMM Match : Tetraspannin (HMM E-Value=0)
Length = 299
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 IIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNA 434
I++F++A GC GA++EN ++ + + + + ++ G A Y+ D V+ L
Sbjct: 90 ILLFLIATVGCIGALRENTILLAIYGGAVTLCLILLVSAGTAVYIH----RDKVVAKLKD 145
Query: 435 SITQY--PVDKNVQKTIDIIQTDLQC 506
+ Y P +N Q ID +QT+L+C
Sbjct: 146 DLQHYRDPDKENFQFLIDRLQTNLKC 171
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/53 (28%), Positives = 31/53 (58%)
Frame = +1
Query: 91 SCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLII 249
+C+KY++F N++F + G++IL++G N D Y+ + ++LI+
Sbjct: 37 TCIKYILFFVNVVFWVFGVLILVIGSYLMTEFKNAWNL-DSILYEPSVVILIV 88
>SB_58401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 261 VFIVAFFGCCGAVKENHCMIIT 326
V V FFGCCGAVKE+ CM+ T
Sbjct: 324 VTFVGFFGCCGAVKESRCMLAT 345
>SB_2984| Best HMM Match : Tetraspannin (HMM E-Value=9e-06)
Length = 187
Score = 38.3 bits (85), Expect = 0.007
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 25/90 (27%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIIT-------------------------FSVFLLIIFVAE 362
++ I+ F GCCGA+KE+ C++ T F V L ++F+ E
Sbjct: 84 LIAIIGFIGCCGALKEHTCLLKTVSIKSILYGYMYAKKISLTIRIYLQFGVILGLLFLVE 143
Query: 363 LAVGIAGYMKHTDLEDSVMRNLNASITQYP 452
L I GY+ ++++ + L+ ++ YP
Sbjct: 144 LGTAITGYIFRSEIKTGLSDGLDTALKDYP 173
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 121 NLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVG 255
+L+F + GL +L VGI A I YM + + Y A +LI +G
Sbjct: 39 HLVFQLMGLSVLAVGIWARIQFSDYMKLSSHD-YATAAYILIGIG 82
>SB_10599| Best HMM Match : Tetraspannin (HMM E-Value=1.8e-10)
Length = 691
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +2
Query: 563 CCSAQEINDG------VVAACTENSTNFHSKGCLTKLVVHMKDIGMVLAGVGVGIAFGQ 721
CC ++ ND V +C + + SK C+ L +KD +V+ GVG+GIAF Q
Sbjct: 464 CCGYEDSNDHGYKNSTVPKSCKDTNGTVFSKNCVKGLEKFLKDHLIVVGGVGIGIAFVQ 522
>SB_47590| Best HMM Match : TSP_3 (HMM E-Value=7.6e-09)
Length = 669
Score = 37.1 bits (82), Expect = 0.016
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFS 332
+V + F GCCGAVKEN C ++ S
Sbjct: 208 LVMFIGFVGCCGAVKENKCFLLLVS 232
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 85 GMSCVKYLMFCFNLLFAITGLI 150
GM C+KYL+F FN +F + +I
Sbjct: 76 GMQCMKYLLFAFNFVFWCSKII 97
>SB_23555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 37.1 bits (82), Expect = 0.016
Identities = 10/21 (47%), Positives = 19/21 (90%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMI 320
++ +++FFGCCGA+KE+ C++
Sbjct: 35 LIALISFFGCCGAIKESRCLL 55
Score = 35.5 bits (78), Expect = 0.047
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +2
Query: 638 GCLTKLVVHMKDIGMVLAGVGVGIAFGQLLGVIFA 742
GCL ++ +KD M++ GVGVG+A Q+L + FA
Sbjct: 92 GCLGTIMKLLKDNLMIVGGVGVGVAVIQILAMTFA 126
>SB_38027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 282 GCCGAVKENHCMIITFSVFLLIIFVAELAVGI 377
G C + N C++ T+ F+LI+ VAE+ + +
Sbjct: 36 GVCALLYMNPCLLKTYFSFMLILVVAEVTIAV 67
>SB_36515| Best HMM Match : UPF0126 (HMM E-Value=0.73)
Length = 150
Score = 28.7 bits (61), Expect = 5.5
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = +3
Query: 255 IIVFIVAFFGCCGAVKEN 308
+++F+++F GC GA++EN
Sbjct: 27 VLMFVISFSGCLGALREN 44
>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 678
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 132 CHYGIDHPDSWHQG*NKLVSLHELHR*ELLQVRSDRSHH 248
C+Y + PD+W + + SL R E++ R S+H
Sbjct: 120 CYYSLQPPDNWDKKKTSIQSLCSRERKEVITSRYQTSNH 158
>SB_3828| Best HMM Match : Tetraspannin (HMM E-Value=6.7e-08)
Length = 542
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = +3
Query: 255 IIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVG 374
+++ ++ GA K+N+ ++ +V +IFV E+++G
Sbjct: 70 LLILAISAVTILGAFKQNNRVLTILAVLFFVIFVTEISLG 109
>SB_57558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 733
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -2
Query: 182 FISALMPTIRMINPVMANRRLKQNMRYF 99
FI+ALM I +I +M + L++ M YF
Sbjct: 39 FITALMGNIILITVIMKTKSLRRTMNYF 66
>SB_27852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = -2
Query: 563 TCSVWADRDRPSRPDCLYPALQVCLYDINSLLDVLVYRILSNGSVQVAHNRIFQV-RML- 390
TC VW D+ + LYP LQ + ++ + +L G+ + I ++ R+L
Sbjct: 322 TC-VWFDKSAMANNQGLYPRLQTLITELRG-----EFALLLGGNREAKDRLIMKIFRLLD 375
Query: 389 HVTSDAHSQFSHEYDQEEY*KRYYHAVVLFDSATAAEERDNE 264
H++ S + + Y + ++ V F S +E + NE
Sbjct: 376 HISKHKDSLYKSYQMEGPYDQTFHEQVKEFVSHYQSEGKTNE 417
>SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 416
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 258 IVFIVAFFG---CCGAVKENHCMIITFSVFLLIIFVAELAVGI 377
+VFIVAFFG V N + T +VF+L + +++L + I
Sbjct: 32 VVFIVAFFGNILAISVVLSNVHLKTTTNVFILNLAISDLLIAI 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,540,414
Number of Sequences: 59808
Number of extensions: 494665
Number of successful extensions: 1420
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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