Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0825
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 60 2e-09
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 54 1e-07
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 48 7e-06
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 46 2e-05
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 46 2e-05
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 45 5e-05
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 42 6e-04
Z73971-4|CAA98254.1| 205|Caenorhabditis elegans Hypothetical pr... 38 0.010
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 36 0.031
Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein. 35 0.055
Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical pr... 29 4.8
X98132-1|CAA66831.1| 387|Caenorhabditis elegans N-acetyllactosa... 29 4.8
U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical pr... 28 8.3
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 60.1 bits (139), Expect = 2e-09
Identities = 23/80 (28%), Positives = 41/80 (51%)
Frame = +3
Query: 267 IVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQ 446
++ F GCCGA++EN+C+ ++F+V L ++ E+A I GY H + L + +
Sbjct: 65 LLGFLGCCGAIRENYCLTVSFAVLLALLITCEIAAVIIGYALHDSFRLGIGNQLQTGMVR 124
Query: 447 YPVDKNVQKTIDIIQTDLQC 506
Y + V+ D +C
Sbjct: 125 YHESRGVESAWDKTHQLFEC 144
Score = 42.3 bits (95), Expect = 4e-04
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 1/123 (0%)
Frame = +2
Query: 383 LHEAYGLGRFGYAQPERFHYSISGRQERPEDY*YHTNRL-AMLGINSPADWADHGLPIPS 559
LH+++ LG Q Y S E D T++L G+ + +DW IP
Sbjct: 106 LHDSFRLGIGNQLQTGMVRYHESRGVESAWD---KTHQLFECCGVTNSSDWLTF-TTIPD 161
Query: 560 TCCSAQEINDGVVAACTENSTNFHSKGCLTKLVVHMKDIGMVLAGVGVGIAFGQLLGVIF 739
+CC + + C + GC+ + + G ++ G+ +A QL+GV F
Sbjct: 162 SCCIEE------IEGCARENAPLFEPGCIHSVEQWVLKNGAMVGGICAVLAAIQLVGVCF 215
Query: 740 ACC 748
ACC
Sbjct: 216 ACC 218
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 LEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFT-DENFYKFAPIVLIIV 252
+EGG++ VKYL+F NL+ + GL ++IVG ++ ++ DE PI+L+++
Sbjct: 2 VEGGVTIVKYLLFLANLVLWVGGLSLIIVGSILQLKFDNVLDILGDERL--ATPILLLVI 59
Query: 253 G 255
G
Sbjct: 60 G 60
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/83 (28%), Positives = 43/83 (51%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 437
+ FI+ F GC G+++EN + +S L ++ +AE + G+ Y L++ + LN
Sbjct: 94 LTFIIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEFSAGVFAYACRDQLDNYIRNLLNDV 153
Query: 438 ITQYPVDKNVQKTIDIIQTDLQC 506
+ Y D ++Q ID +Q C
Sbjct: 154 VVGYRDDPDLQLLIDSMQETWMC 176
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 94 CVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDE--NFYKFAPIVLIIVG 255
CVKY +F FN++F + G +L+ G+ A+I ++N + Y L+IVG
Sbjct: 37 CVKYSVFSFNVIFFLLGFGLLLFGVWAQIEKNTFVNMLSKASKLYLDPTWPLLIVG 92
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/43 (32%), Positives = 28/43 (65%)
Frame = +2
Query: 614 NSTNFHSKGCLTKLVVHMKDIGMVLAGVGVGIAFGQLLGVIFA 742
++ + +++GCL KL + + + +++A V IA Q+LG+ FA
Sbjct: 248 HTASIYTEGCLPKLQLWLNNNMLLVAVSMVIIAIIQVLGICFA 290
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 437
I+ +V +FGC GA K N C + F L++ F ELA + + K ++ V ++ +
Sbjct: 66 IIILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHIKHYVESSMYDT 125
Query: 438 I-TQYPVDKNVQKTIDIIQTDLQC 506
I +Y + + D +Q +C
Sbjct: 126 IRNRYSSETAFKDAFDTVQEKFEC 149
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/78 (26%), Positives = 39/78 (50%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 437
++F+V FFGCCGA E+ ++ F ++I+ EL + + S+ + L S
Sbjct: 77 LLFLVGFFGCCGAGCESPVLLGLFIFIIVILTAVELGATVFAMTNREEFVSSIQQVLKKS 136
Query: 438 ITQYPVDKNVQKTIDIIQ 491
Y + KN++ ++ Q
Sbjct: 137 SATYELRKNIKPIQNVFQ 154
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 437
++ +VA GCCG + +I +S+ + ++ VA L+ GI K L+ + LN
Sbjct: 123 VMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVELSDALNYM 182
Query: 438 ITQYPVDKN-VQKTIDIIQTDLQC 506
+ Y VQ+++D +QT +C
Sbjct: 183 VQHYYQGPGVVQESLDHLQTAFRC 206
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/71 (30%), Positives = 38/71 (53%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNAS 437
IV +VAF GCCGA KE ++ +S L++I ++A I ++ E+ L++S
Sbjct: 92 IVIVVAFLGCCGAAKEWRPLLCCYSSCLMLILAIQIAATIYAFLHSHMFENDFRDILHSS 151
Query: 438 ITQYPVDKNVQ 470
+ Y N++
Sbjct: 152 LKMYNGTDNMK 162
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 67 TMALEGGMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMN 201
TM L +K+ +F FNL+F + GLI L +G+ ++ Y N
Sbjct: 8 TMPLSCTARALKFSLFIFNLVFLLCGLICLGIGLWLVLDKYAIDN 52
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 41.5 bits (93), Expect = 6e-04
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Frame = +3
Query: 216 LLQVRSDRSHHCRIIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKH 395
LL+ + S C +V F G CGAV + +++ F +FL+ F+A++A+G + +
Sbjct: 22 LLKASAYVSLVCGCAQLLVGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMGTLS-LFY 80
Query: 396 TDLEDSVMRNLNASI-------TQYPVDKNVQKTIDIIQTDLQC 506
D SV N+ + T P +K V + ID +Q +C
Sbjct: 81 KDKVYSVKENVREIVKSKYGVMTSEPENKMVTEFIDKLQFYEKC 124
Score = 31.5 bits (68), Expect = 0.68
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 629 HSKGCLTKLVVHMKDIGMVLAGVGVGIAFGQLLGVIFACC 748
H+ GC +L+ + + G G G A +LG+ +CC
Sbjct: 189 HAVGCSERLMSWFNEQIWIFVGFGFGSALTMMLGICLSCC 228
>Z73971-4|CAA98254.1| 205|Caenorhabditis elegans Hypothetical
protein C50H2.6 protein.
Length = 205
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 548 PIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLV 658
P+P+T CSA I++ V +C ST H+K L+K V
Sbjct: 96 PLPATFCSAASIDNNAVKSCKNKSTTLHAKILLSKEV 132
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +3
Query: 267 IVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSV 416
I+ F G GAV + ++ + +F++I+F+ E+A+GI +K + +V
Sbjct: 83 IIGFVGVIGAVIRSKYLLAPYFLFMVILFLLEIAIGITVLVKRRSVRRTV 132
>Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein.
Length = 395
Score = 35.1 bits (77), Expect = 0.055
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGI 377
++ +VA GCCG + +I +S+ + ++ VA L+ GI
Sbjct: 234 VMMVVAMXGCCGITGRSRPFLIIYSMVVFLLLVATLSCGI 273
>Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical
protein W02B12.11 protein.
Length = 387
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 297 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 473
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 474 T 476
+
Sbjct: 59 S 59
>X98132-1|CAA66831.1| 387|Caenorhabditis elegans
N-acetyllactosamine synthase protein.
Length = 387
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 297 VKENHCMIITFSVFLLIIFVAELAVGIAGYMKHTDLEDSVMRNLNASITQY-PVDKNVQK 473
++ +HC+I +FS LIIFVA + ++++ L D R + A+ Q V+ NVQ+
Sbjct: 1 MRTSHCIIRSFSPKRLIIFVAASTLIYVMLLRNSTLNDE--RRIAATEEQVRSVNVNVQQ 58
Query: 474 T 476
+
Sbjct: 59 S 59
>U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical
protein T27B1.2 protein.
Length = 470
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -1
Query: 132 KQEIEAKHEVLYTGHSTFEGHCYSIKYYRQIVLLRNKMIHTSA 4
K E+E +H+ +TG FE + ++ R+ L +K IH+ A
Sbjct: 96 KMELE-EHQNSHTGQKPFECDTCNARFNRRSTLWNHKRIHSDA 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,266,302
Number of Sequences: 27780
Number of extensions: 367885
Number of successful extensions: 1236
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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