Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0825
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    74   2e-15
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.1  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   7.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.4  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 73.7 bits (173), Expect = 2e-15
 Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = +3

Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNLN 431
           I+F+++FFGCCGA++E+HCM ITF+ FLL I + ++AV +  +  +K+ D   ++     
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQ 120

Query: 432 ASITQYPVDKNVQKTIDIIQTDLQC 506
                Y ++   +  ID IQ +LQC
Sbjct: 121 EIFNGYFLNSESKDFIDFIQKNLQC 145



 Score = 47.2 bits (107), Expect = 2e-07
 Identities = 28/84 (33%), Positives = 46/84 (54%)
 Frame = +2

Query: 497 LAMLGINSPADWADHGLPIPSTCCSAQEINDGVVAACTENSTNFHSKGCLTKLVVHMKDI 676
           L   G++S +D+ D   PIP++CC++ E N       T + +N ++ GC+  L   +K  
Sbjct: 143 LQCCGVHSLSDYNDK--PIPASCCNSPENN-------TCSISNSYTNGCVEALKDTVKLA 193

Query: 677 GMVLAGVGVGIAFGQLLGVIFACC 748
           G V   V + IA  +L+G+I A C
Sbjct: 194 GTVFGSVAIAIAIVELIGIICALC 217



 Score = 39.5 bits (88), Expect = 3e-05
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = +1

Query: 85  GMSCVKYLMFCFNLLFAITGLIILIVGIRAEINSYPYMNFTDENFYKFAPIVLIIVG 255
           GM  +KYL+F FN +FA+ GL IL +G+   +     ++   E    F  I LI++G
Sbjct: 4   GMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILG-VSKQIETGLAFPSITLIVLG 59


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 420 RNLNASITQYPVDKNVQKTIDIIQTD-LQCWV 512
           RN+ A + ++ ++    KT+ II    + CW+
Sbjct: 440 RNIKAQVKRFRMETKAAKTLGIIVGGFILCWL 471


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 90  VLCKVPHVLLQ 122
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 90  VLCKVPHVLLQ 122
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 90  VLCKVPHVLLQ 122
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 90  VLCKVPHVLLQ 122
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 90  VLCKVPHVLLQ 122
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 90  VLCKVPHVLLQ 122
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 42  IVLLRNKMIHTSAN 1
           +V+ RNK +HT+ N
Sbjct: 76  VVIARNKSMHTATN 89


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 90  VLCKVPHVLLQ 122
           +LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +3

Query: 90  VLCKVPHVLLQ 122
           +LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 704 RLQRRRAPYQCPSCEQ 657
           R+  +  PY+C  CE+
Sbjct: 140 RIHTKERPYKCDVCER 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,684
Number of Sequences: 438
Number of extensions: 4358
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)