Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0825
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66770.1 68414.m07590 nodulin MtN3 family protein contains Pf...    32   0.48 
At1g32400.2 68414.m03998 senescence-associated family protein co...    30   1.5  
At1g32400.1 68414.m03997 senescence-associated family protein co...    30   1.5  
At2g48110.1 68415.m06022 expressed protein                             28   5.9  

>At1g66770.1 68414.m07590 nodulin MtN3 family protein contains Pfam
           PF03083 MtN3/saliva family; similar to LIM7 (cDNAs
           induced in meiotic prophase in lily microsporocytes)
           GI:431154 from [Lilium longiflorum]
          Length = 261

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = +3

Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHT 398
           IVF+  FF  CG  ++ H ++I+  + + ++FVA LAV +   ++HT
Sbjct: 86  IVFLTIFFVFCG--RQQHRLVISAVLTVQVVFVATLAV-LVLTLEHT 129


>At1g32400.2 68414.m03998 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +3

Query: 255 IIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM 389
           + +F+++  GC G    + C +  +S+ L+++ + EL  G A ++
Sbjct: 90  VALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVEL--GFAAFI 132


>At1g32400.1 68414.m03997 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = +3

Query: 255 IIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM 389
           + +F+++  GC G    + C +  +S+ L+++ + EL  G A ++
Sbjct: 90  VALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVEL--GFAAFI 132


>At2g48110.1 68415.m06022 expressed protein
          Length = 1295

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 354 VAELAVGIAGYMKHTDLEDSVMRN-LNASITQYP--VDKNVQKTIDIIQTDLQCW 509
           ++E A G +G M+H  +E  + RN L+ S   +P  V     +   +I +++ CW
Sbjct: 461 MSESASGCSGNMRHLIVEACISRNLLDTSAYLWPGFVIGGTNQVPQVIPSNISCW 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,199,681
Number of Sequences: 28952
Number of extensions: 342377
Number of successful extensions: 1009
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)