BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0825 (762 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g66770.1 68414.m07590 nodulin MtN3 family protein contains Pf... 32 0.48 At1g32400.2 68414.m03998 senescence-associated family protein co... 30 1.5 At1g32400.1 68414.m03997 senescence-associated family protein co... 30 1.5 At2g48110.1 68415.m06022 expressed protein 28 5.9 >At1g66770.1 68414.m07590 nodulin MtN3 family protein contains Pfam PF03083 MtN3/saliva family; similar to LIM7 (cDNAs induced in meiotic prophase in lily microsporocytes) GI:431154 from [Lilium longiflorum] Length = 261 Score = 31.9 bits (69), Expect = 0.48 Identities = 17/47 (36%), Positives = 30/47 (63%) Frame = +3 Query: 258 IVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYMKHT 398 IVF+ FF CG ++ H ++I+ + + ++FVA LAV + ++HT Sbjct: 86 IVFLTIFFVFCG--RQQHRLVISAVLTVQVVFVATLAV-LVLTLEHT 129 >At1g32400.2 68414.m03998 senescence-associated family protein contains Pfam profile PF00335: Tetraspanin family Length = 280 Score = 30.3 bits (65), Expect = 1.5 Identities = 11/45 (24%), Positives = 26/45 (57%) Frame = +3 Query: 255 IIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM 389 + +F+++ GC G + C + +S+ L+++ + EL G A ++ Sbjct: 90 VALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVEL--GFAAFI 132 >At1g32400.1 68414.m03997 senescence-associated family protein contains Pfam profile PF00335: Tetraspanin family Length = 280 Score = 30.3 bits (65), Expect = 1.5 Identities = 11/45 (24%), Positives = 26/45 (57%) Frame = +3 Query: 255 IIVFIVAFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGYM 389 + +F+++ GC G + C + +S+ L+++ + EL G A ++ Sbjct: 90 VALFVISCCGCVGTCSRSVCCLSCYSLLLILLILVEL--GFAAFI 132 >At2g48110.1 68415.m06022 expressed protein Length = 1295 Score = 28.3 bits (60), Expect = 5.9 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = +3 Query: 354 VAELAVGIAGYMKHTDLEDSVMRN-LNASITQYP--VDKNVQKTIDIIQTDLQCW 509 ++E A G +G M+H +E + RN L+ S +P V + +I +++ CW Sbjct: 461 MSESASGCSGNMRHLIVEACISRNLLDTSAYLWPGFVIGGTNQVPQVIPSNISCW 515 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,199,681 Number of Sequences: 28952 Number of extensions: 342377 Number of successful extensions: 1009 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 990 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1008 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1702303248 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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