Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0824
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03670.1 68415.m00326 AAA-type ATPase family protein contains...    28   4.2  
At5g37490.1 68418.m04515 U-box domain-containing protein similar...    27   7.4  

>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family ('A'TPases
           'A'ssociated with diverse cellular 'A'ctivities)
          Length = 603

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 537 CADIPAMYPTNGFSMLVKTFYKFSLSSDTISYLFLSSVALVKE*EGS*QNS 385
           CA++ +MY   G ++L  TF +  L+S +I +   + V   K  + S  NS
Sbjct: 353 CAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNS 403


>At5g37490.1 68418.m04515 U-box domain-containing protein similar to
           immediate-early fungal elicitor protein CMPG1
           [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 435

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 300 LLTLFCEVI*HTWR*FFRGWFTVLFSRVRSFVMSPLTPLLKPQNLETDRILCPMTKK-TY 476
           +LT F ++  HT R   +GW     S +   + +P  PL+  +  E  R L   T++  Y
Sbjct: 78  VLTTFDQIPNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDY 137

Query: 477 KK 482
           +K
Sbjct: 138 EK 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,876,360
Number of Sequences: 28952
Number of extensions: 199537
Number of successful extensions: 344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)