BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0824 (610 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 28 4.2 At5g37490.1 68418.m04515 U-box domain-containing protein similar... 27 7.4 >At2g03670.1 68415.m00326 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 603 Score = 28.3 bits (60), Expect = 4.2 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = -2 Query: 537 CADIPAMYPTNGFSMLVKTFYKFSLSSDTISYLFLSSVALVKE*EGS*QNS 385 CA++ +MY G ++L TF + L+S +I + + V K + S NS Sbjct: 353 CAELFSMYVGEGEALLRNTFQRARLASPSIIFFDEADVVACKRGDESSSNS 403 >At5g37490.1 68418.m04515 U-box domain-containing protein similar to immediate-early fungal elicitor protein CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam profile PF04564: U-box domain Length = 435 Score = 27.5 bits (58), Expect = 7.4 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = +3 Query: 300 LLTLFCEVI*HTWR*FFRGWFTVLFSRVRSFVMSPLTPLLKPQNLETDRILCPMTKK-TY 476 +LT F ++ HT R +GW S + + +P PL+ + E R L T++ Y Sbjct: 78 VLTTFDQIPNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDY 137 Query: 477 KK 482 +K Sbjct: 138 EK 139 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,876,360 Number of Sequences: 28952 Number of extensions: 199537 Number of successful extensions: 344 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 333 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 344 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1216725696 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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