Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0823
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 52 7e-08
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 45 1e-05
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 31 0.18
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 30 0.32
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 28 1.7
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 28 1.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.2
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 9.2
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 52.4 bits (120), Expect = 7e-08
Identities = 27/72 (37%), Positives = 34/72 (47%)
Frame = +1
Query: 16 AARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYADALEV 195
A RSLHDALC +RC + C+ A+++ALE+
Sbjct: 389 AERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEI 448
Query: 196 IPSTLAENAGLN 231
IP TLAENAGLN
Sbjct: 449 IPVTLAENAGLN 460
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/35 (57%), Positives = 26/35 (74%)
Frame = +3
Query: 318 TDMRTEHVLQPLHVTASALALATETVRAILKIDDI 422
T++ E+VLQPL V SA+ LA ET + I+KIDDI
Sbjct: 489 TNILEENVLQPLLVNISAIQLAAETTKMIMKIDDI 523
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 45.2 bits (102), Expect = 1e-05
Identities = 26/76 (34%), Positives = 33/76 (43%)
Frame = +1
Query: 4 VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
+V A R+LHDALC VR D Y + A+AD
Sbjct: 396 IVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFAD 455
Query: 184 ALEVIPSTLAENAGLN 231
AL+ IP LAEN+GL+
Sbjct: 456 ALDTIPLALAENSGLS 471
Score = 33.9 bits (74), Expect = 0.026
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 321 DMRTEHVLQPLHVTASALALATETVRAILKIDDII 425
DMR + V+ PL L LAT+ R +LK++DII
Sbjct: 502 DMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 31.1 bits (67), Expect = 0.18
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 160 YCLXAYADALEVIPSTLAENAGLN 231
+ + Y +A EV+P T++ENAGL+
Sbjct: 436 HAIKQYGEAFEVVPRTISENAGLD 459
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 321 DMRTEHVLQPLHVTASALALATETVRAILKIDDII 425
D + + L SA+ LATETV +L +D ++
Sbjct: 492 DAKEAGIFDVLLAKKSAIRLATETVLTVLNVDQVV 526
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 30.3 bits (65), Expect = 0.32
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 172 AYADALEVIPSTLAENAGLN 231
A ADA+E+IP TL +N G N
Sbjct: 437 AVADAIEIIPRTLVQNCGAN 456
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 172 AYADALEVIPSTLAENA 222
AYADAL +IP TLA N+
Sbjct: 440 AYADALLIIPKTLAANS 456
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/75 (25%), Positives = 27/75 (36%)
Frame = +1
Query: 7 VAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYADA 186
+A RSLHDA+ V+ + A+A +
Sbjct: 387 IAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARS 446
Query: 187 LEVIPSTLAENAGLN 231
LEVIP L +NAG +
Sbjct: 447 LEVIPRQLCDNAGFD 461
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 698 FIPLLCDKYVLFDREHPAGRLCVANIG*SHRILLNILEISSHASFY 561
FIPLL D L ++E P +++ +HR+ + +LE+ + Y
Sbjct: 86 FIPLLEDTLSLLEKERPV----FSSLAATHRLRIALLELLKKSGSY 127
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 575 EKIFLRYSARYDVINQYWRRINVQQGVLY 661
EK+ LR+ D I W + Q G LY
Sbjct: 88 EKLHLRFDVNKDSITIMWDNPDFQDGTLY 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,060
Number of Sequences: 5004
Number of extensions: 46872
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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