Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0823
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0620 - 19321612-19323237 53 2e-07
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 44 2e-04
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 40 0.002
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 35 0.063
05_01_0337 - 2658647-2658722,2658797-2658915,2658995-2659102,265... 33 0.19
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 33 0.33
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 32 0.58
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 31 1.3
02_03_0356 + 18073794-18074052,18074054-18074163 30 2.4
03_04_0098 - 17275045-17275665 28 7.2
02_01_0565 + 4141592-4141879 28 7.2
>10_08_0620 - 19321612-19323237
Length = 541
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/76 (36%), Positives = 35/76 (46%)
Frame = +1
Query: 4 VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
V+ A RSLHDA C +RC + YC+ +A+
Sbjct: 399 VIDEAQRSLHDAFCVIRCLVNKRFLIAGGGAPEIEMSMQLAAWAKELRGMESYCVREFAE 458
Query: 184 ALEVIPSTLAENAGLN 231
ALEVIP TLAENAGL+
Sbjct: 459 ALEVIPYTLAENAGLD 474
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = +3
Query: 318 TDMRTEHVLQPLHVTASALALATETVRAILKIDDII 425
T++ E+V+QPL V+ SA+ LA E VR ILKIDDI+
Sbjct: 503 TNILEENVVQPLLVSTSAVTLACECVRMILKIDDIV 538
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/36 (58%), Positives = 28/36 (77%)
Frame = +3
Query: 318 TDMRTEHVLQPLHVTASALALATETVRAILKIDDII 425
T++ E+V+QPL V+ SA+ LA E VR ILKIDDI+
Sbjct: 512 TNILEENVVQPLLVSTSAITLACECVRMILKIDDIV 547
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +1
Query: 154 DHYCLXAYADALEVIPSTLAENAGLN 231
+ YC+ +A+ALEVIP TLAENAGLN
Sbjct: 458 ESYCIKEFAEALEVIPYTLAENAGLN 483
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +1
Query: 4 VVAXAARSLHDALCAVR 54
V+ A RSLHDALC +R
Sbjct: 392 VIDEAERSLHDALCVIR 408
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/76 (28%), Positives = 31/76 (40%)
Frame = +1
Query: 4 VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
++ RSLHDALC R + Y + ++AD
Sbjct: 390 MIEETKRSLHDALCVARNLIRNNSIVYGGGSAEISCSVAVEAAADRYPGVEQYAIRSFAD 449
Query: 184 ALEVIPSTLAENAGLN 231
AL+ IP LAEN+GL+
Sbjct: 450 ALDAIPLALAENSGLS 465
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 324 MRTEHVLQPLHVTASALALATETVRAILKIDDIIN 428
M+ ++V + L + LAT+ V+ ILKIDD+I+
Sbjct: 497 MKEQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 35.1 bits (77), Expect = 0.063
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +1
Query: 154 DHYCLXAYADALEVIPSTLAENAGLN 231
D Y + +A++ E++P TLAENAGL+
Sbjct: 432 DQYAIAKFAESFEMVPRTLAENAGLS 457
>05_01_0337 -
2658647-2658722,2658797-2658915,2658995-2659102,
2659187-2659255,2659561-2659655,2659740-2659944,
2660125-2660211,2660291-2660405,2660696-2660802,
2661054-2661146,2661243-2661290,2661345-2661544,
2661993-2662128,2662228-2662291,2662779-2662912
Length = 551
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +1
Query: 172 AYADALEVIPSTLAENAGLN 231
A+ADAL VIP TLAEN+GL+
Sbjct: 459 AFADALLVIPKTLAENSGLD 478
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 32.7 bits (71), Expect = 0.33
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +1
Query: 4 VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
V+ A RSLHDALC + + + A++
Sbjct: 375 VLDEAERSLHDALCVLSQTVNDTRVLFGGGWPEMVMAKAVDDLARKTPGKKSHAIDAFSR 434
Query: 184 ALEVIPSTLAENAGLN 231
AL+ IP+ +A+NAGL+
Sbjct: 435 ALQAIPTIIADNAGLD 450
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 31.9 bits (69), Expect = 0.58
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +1
Query: 4 VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
V+ A RSLHDALC + + + A++
Sbjct: 352 VLDEAERSLHDALCVLSQTVNDTRVLYGGGWPEMVMAKEVDGLARKTPGKKSHAIEAFSR 411
Query: 184 ALEVIPSTLAENAGLN 231
AL+ IP+ +A+NAGL+
Sbjct: 412 ALQSIPTIIADNAGLD 427
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/75 (26%), Positives = 28/75 (37%)
Frame = +1
Query: 7 VAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYADA 186
+ A RSLHDA+ VR + + ++A A
Sbjct: 385 IEEAERSLHDAIMIVRRALKNSTVVPGGGAIDMEISKYLRQHARTIAGKSQFFVNSFAKA 444
Query: 187 LEVIPSTLAENAGLN 231
LEVIP L +NAG +
Sbjct: 445 LEVIPRQLCDNAGFD 459
>02_03_0356 + 18073794-18074052,18074054-18074163
Length = 122
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 598 SKIRCDQPILATHKRPAG-CSLSKSTYLSHSKGINPS 705
SK+ D ILAT + A CS SK T LS S G++PS
Sbjct: 36 SKLCPDASILATLRSLASACSKSKLTGLSPSAGVSPS 72
>03_04_0098 - 17275045-17275665
Length = 206
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 652 CSLSKSTYLSHSKGINPSYSSTEW 723
C+LS+ L HS+ P YSS W
Sbjct: 60 CTLSRHRNLGHSRAGAPGYSSRRW 83
>02_01_0565 + 4141592-4141879
Length = 95
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 470 KYISSSSPFWLIHCIYNVINFEY 402
KYI +SSP L H IY ++ F Y
Sbjct: 45 KYIETSSPEPLFHVIYGLMAFSY 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,458,646
Number of Sequences: 37544
Number of extensions: 293437
Number of successful extensions: 669
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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