Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0823
(776 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 5e-09
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 48 1e-05
SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05) 48 1e-05
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_17097| Best HMM Match : F-box (HMM E-Value=3.8) 28 7.3
SB_15167| Best HMM Match : F-box (HMM E-Value=3.8) 28 7.3
SB_21783| Best HMM Match : Keratin_B2 (HMM E-Value=0.81) 28 9.7
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 28 9.7
>SB_53295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 58.8 bits (136), Expect = 5e-09
Identities = 31/76 (40%), Positives = 37/76 (48%)
Frame = +1
Query: 4 VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
V+ A RSLHDALC +RC D YC+ A+A+
Sbjct: 77 VLEEADRSLHDALCVIRCLVKKRALIAGGGAPEIEVALRLAEYSQTLTSMDAYCVRAFAE 136
Query: 184 ALEVIPSTLAENAGLN 231
ALE+IP TLAENAGLN
Sbjct: 137 ALEIIPYTLAENAGLN 152
Score = 51.2 bits (117), Expect = 9e-07
Identities = 25/43 (58%), Positives = 35/43 (81%)
Frame = +3
Query: 318 TDMRTEHVLQPLHVTASALALATETVRAILKIDDIINTMN*PK 446
T++ E+VLQPL V+ SA+ LA+ETVR+ILKIDDI++ + PK
Sbjct: 181 TNILEENVLQPLLVSTSAVQLASETVRSILKIDDIVSELATPK 223
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 47.6 bits (108), Expect = 1e-05
Identities = 27/76 (35%), Positives = 33/76 (43%)
Frame = +1
Query: 4 VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
+V A RS+HDALC VR + Y + AYAD
Sbjct: 392 IVGEAKRSIHDALCVVRNLVRDSRVVYGGGATELSCSIAIAKEADKISTIEQYAMRAYAD 451
Query: 184 ALEVIPSTLAENAGLN 231
AL+ IP LAEN+GLN
Sbjct: 452 ALDNIPLALAENSGLN 467
>SB_49103| Best HMM Match : Cpn60_TCP1 (HMM E-Value=2.5e-05)
Length = 206
Score = 47.6 bits (108), Expect = 1e-05
Identities = 27/76 (35%), Positives = 33/76 (43%)
Frame = +1
Query: 4 VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
+V A RS+HDALC VR + Y + AYAD
Sbjct: 107 IVGEAKRSIHDALCVVRNLVRDSRVVYGGGATELSCSIAIAKEADKIATIEQYAMRAYAD 166
Query: 184 ALEVIPSTLAENAGLN 231
AL+ IP LAEN+GLN
Sbjct: 167 ALDNIPLALAENSGLN 182
>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 31.9 bits (69), Expect = 0.60
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 330 TEHVLQPLHVTASALALATETVRAILKIDDIINTMN*PKR*RRGNVF*QSINLC*ST 500
T+H+LQ L A + L E + + ++ D+ N N P ++ + S NLC ST
Sbjct: 361 TQHILQNLPFCAFYIRLERELQKLLTELQDLRNGTNRPITNKQSSTCYMSTNLCGST 417
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +1
Query: 172 AYADALEVIPSTLAENAGLN 231
A+ADAL VIP TLA+N+G +
Sbjct: 361 AFADALLVIPKTLAQNSGFD 380
>SB_17097| Best HMM Match : F-box (HMM E-Value=3.8)
Length = 408
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 624 YWLITSYLAEYLRNIFSCFILLVADWCVTSYLN 526
YWL SYL ++ F+ +++ W SYLN
Sbjct: 63 YWLYKSYLNVLSYWLYKSFLNVLSYWLFKSYLN 95
>SB_15167| Best HMM Match : F-box (HMM E-Value=3.8)
Length = 392
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 624 YWLITSYLAEYLRNIFSCFILLVADWCVTSYLN 526
YWL SYL ++ F+ +++ W SYLN
Sbjct: 47 YWLYKSYLNVLSYWLYKSFLNVLSYWLFKSYLN 79
>SB_21783| Best HMM Match : Keratin_B2 (HMM E-Value=0.81)
Length = 316
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/60 (21%), Positives = 29/60 (48%)
Frame = -1
Query: 500 CGLAKINTLLKYISSSSPFWLIHCIYNVINFEYSTHSFGCECERGSCNMKRLQHMLRAHI 321
C ++ T + + SS W + +Y V++ + S+G C SC ++ + ++ +I
Sbjct: 257 CISCRVRTAYRVVFSS---WRVRTLYRVVSRYIVSCSYGVPCRVVSCRVRTVYSVMSRYI 313
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/74 (22%), Positives = 28/74 (37%)
Frame = +1
Query: 4 VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
++ A RSLHDALC + + + ++A
Sbjct: 379 ILDEAERSLHDALCVLNQTGKENKTVNGGGASEVLMAHAVSQLAAKTPGKEAAAMESFAT 438
Query: 184 ALEVIPSTLAENAG 225
AL +P+ +A+NAG
Sbjct: 439 ALRQLPTIIADNAG 452
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,042,195
Number of Sequences: 59808
Number of extensions: 344669
Number of successful extensions: 809
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -