SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0823
         (776 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49068-8|CAA88861.1|  540|Caenorhabditis elegans Hypothetical pr...    54   2e-07
U25697-1|AAA92842.1|  540|Caenorhabditis elegans CCT-4 protein.        54   2e-07
Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical pr...    43   3e-04
Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical pr...    43   3e-04
Z32840-6|CAD01079.1|  336|Caenorhabditis elegans Hypothetical pr...    43   3e-04
U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.        43   3e-04
AF067947-10|AAC19232.2|  535|Caenorhabditis elegans Hypothetical...    31   0.70 
AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AC024136-4|AAF35963.3|  543|Caenorhabditis elegans Hypothetical ...    28   6.5  

>Z49068-8|CAA88861.1|  540|Caenorhabditis elegans Hypothetical
           protein K01C8.10 protein.
          Length = 540

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 29/76 (38%), Positives = 35/76 (46%)
 Frame = +1

Query: 4   VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
           V+  A RS+HDALC +RC                                  YC  A+AD
Sbjct: 397 VLEEADRSIHDALCVIRCLVKKKALLPGGGAPEMEIAVKLRNLAQTQHGATQYCWRAFAD 456

Query: 184 ALEVIPSTLAENAGLN 231
           ALE+IP TLAENAGL+
Sbjct: 457 ALELIPYTLAENAGLS 472



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +3

Query: 318 TDMRTEHVLQPLHVTASALALATETVRAILKIDDII 425
           TDM  E V+QPL VTASA+  A+E VR+ILKIDDI+
Sbjct: 501 TDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIV 536


>U25697-1|AAA92842.1|  540|Caenorhabditis elegans CCT-4 protein.
          Length = 540

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 29/76 (38%), Positives = 35/76 (46%)
 Frame = +1

Query: 4   VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
           V+  A RS+HDALC +RC                                  YC  A+AD
Sbjct: 397 VLEEADRSIHDALCVIRCLVKKKALLPGGGAPEMEIAVKLRNLAQTQHGATQYCWRAFAD 456

Query: 184 ALEVIPSTLAENAGLN 231
           ALE+IP TLAENAGL+
Sbjct: 457 ALELIPYTLAENAGLS 472



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +3

Query: 318 TDMRTEHVLQPLHVTASALALATETVRAILKIDDII 425
           TDM  E V+QPL VTASA+  A+E VR+ILKIDDI+
Sbjct: 501 TDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIV 536


>Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 31/75 (41%)
 Frame = +1

Query: 4   VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
           ++  A R+LHDALC +R                                 + Y   A+AD
Sbjct: 393 IIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAFAD 452

Query: 184 ALEVIPSTLAENAGL 228
           ALE IP  LAEN+GL
Sbjct: 453 ALESIPMALAENSGL 467



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 321 DMRTEHVLQPLHVTASALALATETVRAILKIDDI 422
           DM+ + V++ L      ++LAT+ VR ILKIDD+
Sbjct: 499 DMKEQKVIETLLSKREQISLATQVVRMILKIDDV 532


>Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 31/75 (41%)
 Frame = +1

Query: 4   VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
           ++  A R+LHDALC +R                                 + Y   A+AD
Sbjct: 393 IIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAFAD 452

Query: 184 ALEVIPSTLAENAGL 228
           ALE IP  LAEN+GL
Sbjct: 453 ALESIPMALAENSGL 467



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 321 DMRTEHVLQPLHVTASALALATETVRAILKIDDI 422
           DM+ + V++ L      ++LAT+ VR ILKIDD+
Sbjct: 499 DMKEQKVIETLLSKREQISLATQVVRMILKIDDV 532


>Z32840-6|CAD01079.1|  336|Caenorhabditis elegans Hypothetical
           protein C07G2.3b protein.
          Length = 336

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 31/75 (41%)
 Frame = +1

Query: 4   VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
           ++  A R+LHDALC +R                                 + Y   A+AD
Sbjct: 187 IIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAFAD 246

Query: 184 ALEVIPSTLAENAGL 228
           ALE IP  LAEN+GL
Sbjct: 247 ALESIPMALAENSGL 261



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 321 DMRTEHVLQPLHVTASALALATETVRAILKIDDI 422
           DM+ + V++ L      ++LAT+ VR ILKIDD+
Sbjct: 293 DMKEQKVIETLLSKREQISLATQVVRMILKIDDV 326


>U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.
          Length = 542

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 24/75 (32%), Positives = 31/75 (41%)
 Frame = +1

Query: 4   VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
           ++  A R+LHDALC +R                                 + Y   A+AD
Sbjct: 393 IIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAFAD 452

Query: 184 ALEVIPSTLAENAGL 228
           ALE IP  LAEN+GL
Sbjct: 453 ALESIPMALAENSGL 467



 Score = 33.9 bits (74), Expect = 0.13
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 321 DMRTEHVLQPLHVTASALALATETVRAILKIDDI 422
           DM+ + V++ L      ++LAT+ VR ILKIDD+
Sbjct: 499 DMKEQKVIETLLSKREQISLATQVVRMILKIDDV 532


>AF067947-10|AAC19232.2|  535|Caenorhabditis elegans Hypothetical
           protein T10B5.5a protein.
          Length = 535

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 21/75 (28%), Positives = 26/75 (34%)
 Frame = +1

Query: 7   VAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYADA 186
           +A   RSLHDA+  VR                                 D     AY  A
Sbjct: 380 IAETERSLHDAIMIVRRAKKNDSIVAGGGAIEMELSRLIREHSKGIEGKDQAFWMAYGQA 439

Query: 187 LEVIPSTLAENAGLN 231
            E+IP  L +NAGL+
Sbjct: 440 FEIIPRQLCQNAGLD 454


>AC024827-1|AAF60806.2|  581|Caenorhabditis elegans Hypothetical
           protein Y55F3AR.3 protein.
          Length = 581

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 154 DHYCLXAYADALEVIPSTLAENAGL 228
           + Y +  +A ALE +P  +AENAG+
Sbjct: 467 EQYAIKKFAHALETLPKAIAENAGM 491


>Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical
           protein T09F5.8 protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -1

Query: 455 SSPFWLIHCIYNVINFEYSTHSFGCEC--ERGSCNMKRLQH-MLRAHICNS 312
           + P++   C+Y +  F +  H FG  C   R S  MK ++  M   H  NS
Sbjct: 7   NEPYYFSLCLYTIGMFSFPIHLFGAYCILFRTSIAMKHVKWVMFNLHFWNS 57


>AC024136-4|AAF35963.3|  543|Caenorhabditis elegans Hypothetical
           protein F54A3.3 protein.
          Length = 543

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 321 DMRTEHVLQPLHVTASALALATETVRAILKIDDIIN 428
           DM    +  PL V    L  A ET   +L+IDDI++
Sbjct: 492 DMNKLEIWDPLAVRIQVLKTAIETSVMLLRIDDIVS 527


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,007,400
Number of Sequences: 27780
Number of extensions: 261918
Number of successful extensions: 779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -