Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0823
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.7  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   9.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 539 VTHQSATNKMKHEKIFLRYSARYDVINQYWRRINVQQGVLY 661
           V+H +  N  K +   ++Y+   D+ +     INVQ  VLY
Sbjct: 667 VSHANQRNMYKLDLKNMKYTRSADLSSYNCVPINVQFSVLY 707


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 386 GCECERGSCNMKRLQHMLRAH 324
           GC C +G      L H+LR +
Sbjct: 608 GCRCVKGILLKSGLYHVLRGN 628


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 393 VRAILKIDDIINT 431
           ++AI+K+DDII T
Sbjct: 113 MKAIMKVDDIICT 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,812
Number of Sequences: 438
Number of extensions: 3659
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)