Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0823
         (776 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P...    57   1e-08
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu...    38   0.010
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu...    38   0.010
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P...    37   0.017
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P...    33   0.16 
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P...    32   0.37 
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P...    32   0.37 
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P...    31   0.85 
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP...    28   6.0  
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    28   7.9  

>At3g18190.1 68416.m02314 chaperonin, putative similar to
           SWISS-PROT:P50991- T-complex protein 1, delta subunit
           (TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 536

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 31/76 (40%), Positives = 37/76 (48%)
 Frame = +1

Query: 4   VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
           V+  A RSLHDALC VRC                                + YC+ ++A+
Sbjct: 394 VLDEAERSLHDALCVVRCLVSKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVKSFAE 453

Query: 184 ALEVIPSTLAENAGLN 231
           ALEVIP TLAENAGLN
Sbjct: 454 ALEVIPYTLAENAGLN 469



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 22/36 (61%), Positives = 29/36 (80%)
 Frame = +3

Query: 318 TDMRTEHVLQPLHVTASALALATETVRAILKIDDII 425
           T++  E+V+QPL V+ SA+ LATE VR ILKIDDI+
Sbjct: 498 TNILEENVVQPLLVSTSAITLATECVRMILKIDDIV 533


>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 459

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 20/75 (26%), Positives = 30/75 (40%)
 Frame = +1

Query: 4   VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
           ++    RS+HDALC  R                                 + Y + A+A+
Sbjct: 314 MIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAE 373

Query: 184 ALEVIPSTLAENAGL 228
           AL+ +P  LAEN+GL
Sbjct: 374 ALDSVPMALAENSGL 388



 Score = 34.7 bits (76), Expect = 0.069
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +3

Query: 321 DMRTEHVLQPLHVTASALALATETVRAILKIDDIIN 428
           DMR ++V + L      + LAT+ V+ ILKIDD+I+
Sbjct: 420 DMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 455


>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 37.5 bits (83), Expect = 0.010
 Identities = 20/75 (26%), Positives = 30/75 (40%)
 Frame = +1

Query: 4   VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
           ++    RS+HDALC  R                                 + Y + A+A+
Sbjct: 390 MIEETKRSIHDALCVARNLIRNKSIVYGGGAAEIACSLAVDAAADKYPGVEQYAIRAFAE 449

Query: 184 ALEVIPSTLAENAGL 228
           AL+ +P  LAEN+GL
Sbjct: 450 ALDSVPMALAENSGL 464



 Score = 34.7 bits (76), Expect = 0.069
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +3

Query: 321 DMRTEHVLQPLHVTASALALATETVRAILKIDDIIN 428
           DMR ++V + L      + LAT+ V+ ILKIDD+I+
Sbjct: 496 DMREQNVFETLIGKQQQILLATQVVKMILKIDDVIS 531


>At3g03960.1 68416.m00415 chaperonin, putative similar to
           SWISS-PROT:P42932- T-complex protein 1, theta subunit
           (TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 549

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +1

Query: 154 DHYCLXAYADALEVIPSTLAENAGLN 231
           D Y +  YA++ E +P TLA+NAGLN
Sbjct: 437 DKYAITKYAESFEFVPKTLADNAGLN 462


>At5g20890.1 68418.m02481 chaperonin, putative similar to
           SWISS-PROT:P78371- T-complex protein 1, beta subunit
           (TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 527

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = +1

Query: 4   VVAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYAD 183
           V+  A RSLHDALC +                                    + + A++ 
Sbjct: 377 VLDEAERSLHDALCVLSQTVNDTRVLLGGGWPEMVMAKEVDELARKTAGKKSHAIEAFSR 436

Query: 184 ALEVIPSTLAENAGLN 231
           AL  IP+T+A+NAGL+
Sbjct: 437 ALVAIPTTIADNAGLD 452


>At5g16070.1 68418.m01878 chaperonin, putative similar to
           SWISS-PROT:P80317 T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +1

Query: 172 AYADALEVIPSTLAENAGLN 231
           A+A+AL V+P TLAENAGL+
Sbjct: 442 AFANALLVVPKTLAENAGLD 461


>At3g02530.1 68416.m00241 chaperonin, putative similar to
           SWISS-PROT:P80317- T-complex protein 1, zeta subunit
           (TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +1

Query: 172 AYADALEVIPSTLAENAGLN 231
           A+A+AL V+P TLAENAGL+
Sbjct: 443 AFANALLVVPKTLAENAGLD 462


>At3g11830.1 68416.m01450 chaperonin, putative similar to
           SWISS-PROT:P80313 T-complex protein 1, eta subunit
           (TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
           domain, TCP-1/cpn60 chaperonin family
          Length = 557

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 21/75 (28%), Positives = 27/75 (36%)
 Frame = +1

Query: 7   VAXAARSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYADA 186
           +  A RSLHDA+  VR                                     + +YA A
Sbjct: 385 IEEAERSLHDAIMIVRRAVKNSTVVPGGGAIDMEISKYLRQHSRTIAGKSQLFINSYAKA 444

Query: 187 LEVIPSTLAENAGLN 231
           LEVIP  L +NAG +
Sbjct: 445 LEVIPRQLCDNAGFD 459


>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
           TCP-1-alpha / chaperonin (CCT1) identical to
           SWISS-PROT:P28769- T-complex protein 1, alpha subunit
           (TCP-1-alpha) [Arabidopsis thaliana]
          Length = 545

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/67 (26%), Positives = 24/67 (35%)
 Frame = +1

Query: 22  RSLHDALCAVRCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDHYCLXAYADALEVIP 201
           R+LHDALC V+                                 +   +  +ADAL +IP
Sbjct: 393 RALHDALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFADALLIIP 452

Query: 202 STLAENA 222
             LA NA
Sbjct: 453 KVLAVNA 459


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 80  WPAAALPRLQRRPVSRVLLSQHPEPITIVYXPTPMLSKXYPPR 208
           W    +PR +R   S  LLS  P    I + PTP+ ++   PR
Sbjct: 44  WKKRRMPRQRRSSSSFNLLSFPPPMPPISHVPTPLPARKIDPR 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,057,374
Number of Sequences: 28952
Number of extensions: 236000
Number of successful extensions: 574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1736283200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)