Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0822
         (556 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    28   0.18 
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    26   0.95 
AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal...    26   0.95 

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 28.3 bits (60), Expect = 0.18
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 73   QRGQRSRSDEQDRRGSRNATGSFTRSGTQNEKXLRKTAG 189
            +R +R  SDE+D  GS+  + S +RSG+ +    R  +G
Sbjct: 1046 KRKRRIASDEEDSDGSQRRSRSRSRSGSGSRSRSRSGSG 1084



 Score = 25.4 bits (53), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 85   RSRSDEQDRRGSRNATGSFTRSGTQNEKXLR 177
            RSRS    R GSR  +GS +RS +++    R
Sbjct: 1078 RSRSGSGSRAGSRAGSGSRSRSRSRSRSRSR 1108



 Score = 25.0 bits (52), Expect = 1.7
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 4    RSRDRHVVARLYIGRDAHXRATLQRGQRSRSDEQDRRGSRNATGSFTRSGTQNEKXLRKT 183
            RSR R   A+    R        +   RSRS  Q     ++ + S +RSG+Q  +  R++
Sbjct: 1104 RSRSRSGSAKGSRSRSRSGSGGSRSRSRSRSRSQSAGSRKSGSRSRSRSGSQASRGSRRS 1163



 Score = 23.8 bits (49), Expect = 3.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 73   QRGQRSRSDEQDRRGSRNATGSFTRSGTQ 159
            QR  RSRS       SR+ +GS +R+G++
Sbjct: 1062 QRRSRSRSRSGSGSRSRSRSGSGSRAGSR 1090



 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 85   RSRSDEQDRRGSRNATGSFTRSGT 156
            RSRS  + R GS   + S +RSG+
Sbjct: 1100 RSRSRSRSRSGSAKGSRSRSRSGS 1123


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +1

Query: 382 RMLEYDPKXRV-TPYYALQHNFFKXTADXSXNTQQQATSHHQHVQSR 519
           + L  DP   V  P     +N        S N QQQ   HH H+Q +
Sbjct: 747 QQLSADPNGIVDAPQVISYNNMNNRRIVPSPNQQQQQQHHHHHLQQQ 793


>AJ301655-1|CAC35008.1| 1433|Anopheles gambiae putative epidermal
            growth factor receptorprotein.
          Length = 1433

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +1

Query: 418  PYYALQHNFFKXTADXSXNTQQQATSHHQHVQ 513
            P   LQH + +         QQQ   H QH Q
Sbjct: 1296 PLQTLQHQYQQQLQQQQQQQQQQQQQHQQHQQ 1327


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 410,507
Number of Sequences: 2352
Number of extensions: 6473
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51722361
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)