Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0821
         (740 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D55FBF Cluster: PREDICTED: similar to CG11063-PB...    69   9e-11
UniRef50_Q4SVZ8 Cluster: Chromosome undetermined SCAF13701, whol...    38   0.20 
UniRef50_Q4E1L0 Cluster: Putative uncharacterized protein; n=3; ...    37   0.45 
UniRef50_Q8IDG1 Cluster: Putative uncharacterized protein PF13_0...    36   1.4  
UniRef50_A6VWH9 Cluster: Putative uncharacterized protein; n=1; ...    35   2.4  
UniRef50_Q24HW7 Cluster: Putative uncharacterized protein; n=1; ...    35   2.4  
UniRef50_Q1EWK0 Cluster: GTP-binding signal recognition particle...    34   4.2  
UniRef50_Q11VU9 Cluster: Candidate bifunctional family GT51 b-gl...    33   5.6  
UniRef50_Q24CJ4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_Q16UN4 Cluster: Microtubule-associated protein; n=3; Eu...    33   9.7  
UniRef50_Q2KHR3 Cluster: Glutamine and serine-rich protein 1; n=...    33   9.7  

>UniRef50_UPI0000D55FBF Cluster: PREDICTED: similar to CG11063-PB;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG11063-PB - Tribolium castaneum
          Length = 594

 Score = 69.3 bits (162), Expect = 9e-11
 Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 8/88 (9%)
 Frame = +1

Query: 259 KSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIA--SINKRDINT- 429
           K + +GAIESFV +   Q    DY+ YER+N+IASSK+ATPK+VET+    + + DI   
Sbjct: 49  KQKSMGAIESFVAEGPTQQKSNDYTLYERNNIIASSKYATPKQVETLVQKQVEENDIYVQ 108

Query: 430 TALP-----ASPTRSIDSLSQRSLSYQT 498
            A P     ASPT S+   SQ S S +T
Sbjct: 109 CAKPQVPPNASPTHSLSGSSQHSGSPRT 136


>UniRef50_Q4SVZ8 Cluster: Chromosome undetermined SCAF13701, whole
           genome shotgun sequence; n=2; Tetraodontidae|Rep:
           Chromosome undetermined SCAF13701, whole genome shotgun
           sequence - Tetraodon nigroviridis (Green puffer)
          Length = 459

 Score = 38.3 bits (85), Expect = 0.20
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = +1

Query: 346 SNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQRSLSYQTDDLSKFLGT 525
           S  +  S  +T     T AS+ +RD+  + LPA        LS+RS+S+ + DL+++L  
Sbjct: 330 STTLPPSAASTSSTATTTASL-RRDVPPSRLPAQGQARPPQLSRRSISFSSQDLARYLCE 388

Query: 526 LVRN 537
           ++R+
Sbjct: 389 IIRD 392


>UniRef50_Q4E1L0 Cluster: Putative uncharacterized protein; n=3;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 941

 Score = 37.1 bits (82), Expect = 0.45
 Identities = 23/68 (33%), Positives = 36/68 (52%)
 Frame = +1

Query: 301 NTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQR 480
           +T    R+ YSF E SNV+ + K A  + V+    +N  +  T+ L  SP+ S  SLS  
Sbjct: 236 HTSVGERKKYSFSEVSNVMNTGKIAGDRHVQEGEKVNGSNRATSHL-LSPSSSFSSLSLS 294

Query: 481 SLSYQTDD 504
           S+S+   +
Sbjct: 295 SVSFHRSE 302


>UniRef50_Q8IDG1 Cluster: Putative uncharacterized protein
           PF13_0283; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF13_0283 - Plasmodium
           falciparum (isolate 3D7)
          Length = 595

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = +1

Query: 259 KSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTAL 438
           K + +  I+S  L   Q N R D  FY + N+  S  +   KRVE  ++     +N+   
Sbjct: 27  KDKHLYVIKSIPLKGKQLNVRNDTKFYNKYNINNSLNYERKKRVEYYSNNKPNHLNSKNN 86

Query: 439 PASPTRSIDSLSQRSLSY 492
                 + +S ++R++SY
Sbjct: 87  KFILYNTNNSKNERNMSY 104


>UniRef50_A6VWH9 Cluster: Putative uncharacterized protein; n=1;
           Marinomonas sp. MWYL1|Rep: Putative uncharacterized
           protein - Marinomonas sp. MWYL1
          Length = 616

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 26/114 (22%), Positives = 48/114 (42%)
 Frame = +1

Query: 181 FENFKKSRGWN*AGARGYNFGSEPLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIA 360
           F++   +  WN      +N  S  LGK   V A+ ++++     N   D+S   + N+ A
Sbjct: 306 FDDHDVTDDWNLTEENKHNLSSSWLGKQVYVNALSAYIVCQHWGNQPDDFSPAMQQNIAA 365

Query: 361 SSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQRSLSYQTDDLSKFLG 522
            +K  T +  + +  +  +          PT  +D+ +QR   Y  D+L    G
Sbjct: 366 LAKHPTQENHKPLEVLFSKYWGYLLEQTPPTLVLDTRTQR--VYDGDNLELISG 417


>UniRef50_Q24HW7 Cluster: Putative uncharacterized protein; n=1;
            Tetrahymena thermophila SB210|Rep: Putative
            uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1191

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = +1

Query: 283  ESFVLDNTQQ--NTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTR 456
            + +++ N QQ  N  Q  S   + ++       T ++ + + +I+    N+  L  S  +
Sbjct: 898  QPYLIQNQQQITNNSQSQSQQFQQHLQQQQLQLTTQQQQLLKAISNNKTNSIQLSQSQQQ 957

Query: 457  SIDSLSQRSLSYQTDDLSKFLGTLVRNTHRLFTKT*IITVN 579
            S+ S SQ+ +SY    L       +  T+R+FT   + T+N
Sbjct: 958  SLTS-SQKQISYTVQQLQNSQNNGLSKTNRIFTDLDLKTIN 997


>UniRef50_Q1EWK0 Cluster: GTP-binding signal recognition particle
           SRP54, G-domain; n=1; Clostridium oremlandii OhILAs|Rep:
           GTP-binding signal recognition particle SRP54, G-domain
           - Clostridium oremlandii OhILAs
          Length = 409

 Score = 33.9 bits (74), Expect = 4.2
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
 Frame = +1

Query: 271 VGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTT-ALPAS 447
           V AIE  V   + ++        E  N + S      K+  T  ++N+  INTT +    
Sbjct: 51  VAAIEDEVATTSFKSKNSATDSKENFNHLFSDTPTVNKKFTTTDTLNR--INTTKSTELD 108

Query: 448 PTRSIDSLSQRSLSYQTDDLSKFLGTLVRNTHRLFTKT*IITVNSVHHNH 597
             + + S +   L  + DD+   LGT+V     + T+     V++ +H++
Sbjct: 109 GIQPVGSKTDSDLKKEIDDIKNLLGTVVHQMQHIHTQNSTDQVSNPYHSY 158


>UniRef50_Q11VU9 Cluster: Candidate bifunctional family GT51
           b-glycosyltransferase/PBP transpeptidase, candidate
           murein polymerase, Glycosyltransferase Family 51
           protein; n=2; Flexibacteraceae|Rep: Candidate
           bifunctional family GT51 b-glycosyltransferase/PBP
           transpeptidase, candidate murein polymerase,
           Glycosyltransferase Family 51 protein - Cytophaga
           hutchinsonii (strain ATCC 33406 / NCIMB 9469)
          Length = 774

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 97  TIDFNNSDHGFFKEKQYR*TTVCTWS 174
           T+D+N+  H FFK K+    TVCT+S
Sbjct: 573 TLDYNSQQHWFFKPKELGLRTVCTYS 598


>UniRef50_Q24CJ4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 825

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 30/122 (24%), Positives = 51/122 (41%)
 Frame = +1

Query: 154 TTVCTWSSRFENFKKSRGWN*AGARGYNFGSEPLGKSRPVGAIESFVLDNTQQNTRQDYS 333
           ++ C  S  FENFKK +         Y FGS  +         E F  + T  N  Q  S
Sbjct: 515 SSFCQPSDTFENFKKQQQ---LSQYNYRFGSNNISDKNQFNHNEYFQTEQTMLN-NQTIS 570

Query: 334 FYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQRSLSYQTDDLSK 513
             + S+ +     +    +     +NK+ I  T      T++ + L Q+++  +T  LSK
Sbjct: 571 KNKNSDYLNCWSQSQSNEIHNF--LNKQIILDTKY--QQTQNYNQLQQQNVKLETTQLSK 626

Query: 514 FL 519
           ++
Sbjct: 627 YI 628


>UniRef50_Q16UN4 Cluster: Microtubule-associated protein; n=3;
           Eukaryota|Rep: Microtubule-associated protein - Aedes
           aegypti (Yellowfever mosquito)
          Length = 4478

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +1

Query: 340 ERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQRSLS 489
           +++    SS  +TP   E   ++ KR I+TTA  A+ T  +D++ Q+ L+
Sbjct: 771 DKNGTTDSSLVSTPSADEAGIAVQKRIIDTTASAAAGTSDMDAIQQQQLA 820


>UniRef50_Q2KHR3 Cluster: Glutamine and serine-rich protein 1; n=33;
           Amniota|Rep: Glutamine and serine-rich protein 1 - Homo
           sapiens (Human)
          Length = 1735

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 639 QEVVYPVGRAGDNMVVVVNAVHRNNLRFRKQAVGIAHQGSQEFRKIVSLITQ 484
           QE  Y V +A D       +V R+N R   Q +G+A Q S++   +V  +TQ
Sbjct: 593 QESTYKVSKADDRYS---QSVIRSNSRLEDQVIGVALQASKKEESVVGSVTQ 641


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 703,300,093
Number of Sequences: 1657284
Number of extensions: 13874902
Number of successful extensions: 34394
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 33134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34386
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60500186565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)