Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0821
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 27 2.8
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 2.8
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 26 4.9
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S... 26 6.5
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 6.5
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 26 6.5
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 6.5
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce... 25 8.6
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 25 8.6
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/73 (26%), Positives = 34/73 (46%)
Frame = +1
Query: 301 NTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQR 480
NTQ N S +E NV +S + ++ S+N + TA+ P RS+ SL+
Sbjct: 155 NTQNNQSTLASNHEDENVSSSGG----QEMQDHGSVNNLESPGTAIGRLPVRSVTSLADS 210
Query: 481 SLSYQTDDLSKFL 519
++ T + ++
Sbjct: 211 NMEDYTRAVMNYI 223
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -2
Query: 376 SQIWTKLSHLIVHKNYNLDECFAEY 302
+Q++T LS+ I + + LDECF E+
Sbjct: 579 NQVFTLLSNFIQNPLFVLDECFDEF 603
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 624 GIPPPVSDGYYDTRYSKAQP 683
G PP + +G YDTR A P
Sbjct: 360 GYPPQIVEGNYDTRLPSALP 379
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 253 LGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASS 366
L + R +I S +LD +QN R YS +R+ I S+
Sbjct: 489 LVQRRSKSSIASTILDLRKQNPRNSYSKEKRAQYIGSN 526
>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/79 (22%), Positives = 31/79 (39%)
Frame = +1
Query: 280 IESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRS 459
IE+F+ D N R+D+ + S+ S E + N+ + T+
Sbjct: 431 IETFINDEASNNHREDFYGVKNSDTDTDSDSLADSDDEIFLNRNQ---GIDEVEFDETKF 487
Query: 460 IDSLSQRSLSYQTDDLSKF 516
D L + YQ D+ +F
Sbjct: 488 YDLLKGKDGKYQNQDVDEF 506
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.8 bits (54), Expect = 6.5
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Frame = +1
Query: 373 ATPKRVETIASIN-KRDINTTALPASPTRSIDSLSQRSLSYQT--DDLSKFLGTLVRNTH 543
ATP+ AS++ +T P+ R+ S S S S T D + +T
Sbjct: 23 ATPRTFAPSASVSINYGTLSTVFPSLYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTS 82
Query: 544 RLFTK-T*IITVNSVHHNHHIITSSTNRVYH 633
+ T +IT + V ++ II+SSTN H
Sbjct: 83 TSSSSGTSVITASDVSASNEIISSSTNNSIH 113
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 310 QNTRQDYSFYERSNVIASSKFATPKRVET--IASINKRDINTT 432
QN + + FY +NVI++S T + T +KR N T
Sbjct: 124 QNNFRYFQFYGTTNVISASNLTTTSEIPTFKFPIFSKRKYNDT 166
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 197 FLKFSNLEDQVHTVVHRYCFSLKNPWSELLKSMVFLY 87
F KF+ L D+ + FS+K+ + +LKS+ +L+
Sbjct: 562 FRKFAELNDRQSYKMLLQTFSIKSEYQVVLKSIKYLF 598
>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/66 (21%), Positives = 33/66 (50%)
Frame = +1
Query: 298 DNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQ 477
++ + + + Y+ +R + + +TP R+ S D++T + + T S +++SQ
Sbjct: 315 ESRKSSFQSSYNDADRPFQVGAQTQSTPNRISRSDSPIVYDVDTHSEDNASTASSEAISQ 374
Query: 478 RSLSYQ 495
S+Q
Sbjct: 375 SMRSFQ 380
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 8.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 84 NYHLKHHESSQVFGFRSSTQNIK 16
N H +H + +VFGFR+ N++
Sbjct: 351 NLHEVYHANQEVFGFRALYYNVQ 373
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,170
Number of Sequences: 5004
Number of extensions: 59267
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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