Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0821
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672...    29   2.9  
07_03_0634 + 20125242-20125688                                         29   2.9  
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199...    29   3.9  
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674...    28   6.8  
06_03_0284 - 19155236-19155400,19155831-19156046,19158387-19158596     28   9.0  
04_03_0438 + 15929220-15929453,15929564-15929764,15930874-159310...    28   9.0  
02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678     28   9.0  

>11_05_0065 +
           18766566-18766576,18767023-18767083,18767170-18767268,
           18767346-18767467,18767577-18767673,18767778-18767824,
           18768020-18768203,18768349-18768400,18768795-18768985,
           18769072-18770020,18770866-18771022,18771134-18771206,
           18771292-18771465,18771880-18771993,18772110-18772236,
           18772331-18772443,18772614-18772729,18772847-18773000
          Length = 946

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +1

Query: 316 TRQDYSFYERSNVIASSKFATPKRV-ETIASINKRDINTTALPASPT 453
           T  DY     ++  +S+ F   KRV ET+AS  K   N  A P+SP+
Sbjct: 266 TSNDYVLNAENSSGSSANFGCSKRVFETLASPTKTIKNMLAAPSSPS 312


>07_03_0634 + 20125242-20125688
          Length = 148

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +2

Query: 83  LNKEKP*ILIIQTMDSSRRNNTDEQRCVLGLQDLKISKKVEDGTEQAQGATTSAP 247
           +NKE P I      D  RR +    RC   +  L +S  V  G   A  A T++P
Sbjct: 9   MNKENPEIPTTFNPDPRRRVHWRNMRCANSVAYLSLSAFVMSGRAVASAAATASP 63


>04_03_0819 +
           20018496-20019487,20019587-20019721,20019834-20019978,
           20020135-20020416,20020649-20020910,20021028-20021224,
           20021315-20021425,20022341-20022392,20022442-20022584,
           20023121-20023210,20023300-20023800,20024108-20024176,
           20024866-20025011,20025475-20025530,20026140-20026286,
           20027405-20027530,20027608-20027876,20028026-20028127
          Length = 1274

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 207 MELSRRKGLQLRLRALRQKSSGRRNREL 290
           + LSRR+G +LRL A  ++  GRR R L
Sbjct: 49  LSLSRRRGPRLRLLASPRRRHGRRRRAL 76


>07_03_1474 -
           26766078-26766536,26766634-26766885,26767201-26767401,
           26767986-26768156,26768249-26768433,26768526-26768851,
           26769430-26770631
          Length = 931

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 681 PQGPVNTSLRVFRHYLE 731
           P  PV TSLRVFR YL+
Sbjct: 172 PACPVETSLRVFRRYLQ 188


>06_03_0284 - 19155236-19155400,19155831-19156046,19158387-19158596
          Length = 196

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +1

Query: 280 IESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIAS 405
           IESFV+D  ++NT++D  ++ ++ +  + +       E++AS
Sbjct: 153 IESFVVDIPEENTKEDICYFVKNLLRCNLRTLADVSEESLAS 194


>04_03_0438 +
           15929220-15929453,15929564-15929764,15930874-15931046,
           15931131-15931233,15931763-15932107
          Length = 351

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = +1

Query: 307 QQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQ 477
           Q+N  ++   +ER N +A+ K  TP ++  +A ++ +  +   +P   T  I++L+Q
Sbjct: 244 QENLEKNAEIFERVNAMAARKGCTPSQL-ALAWVHHQGSDVCPIPG--TTKIENLNQ 297


>02_03_0248 - 16820997-16821275,16821979-16822147,16822350-16822678
          Length = 258

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/82 (23%), Positives = 37/82 (45%)
 Frame = +1

Query: 292 VLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSL 471
           V+DN + +   D   +    +  + K+ T     T+     R++NT+   +  +R  D  
Sbjct: 127 VIDNLETSPVPDTLLW---GLATNKKYTTKSMYRTLTFRGIRELNTSMWLSVKSRVSDLF 183

Query: 472 SQRSLSYQTDDLSKFLGTLVRN 537
           S+++L     DL +FL    +N
Sbjct: 184 SKKNLDDIDADLERFLHERFKN 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,712,587
Number of Sequences: 37544
Number of extensions: 381172
Number of successful extensions: 849
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)