Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0821
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)            29   5.2  
SB_26219| Best HMM Match : MANEC (HMM E-Value=0.12)                    29   5.2  
SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8)                      28   6.9  

>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 313  NTRQDYSFYERSNVIASSKFATPKRV 390
            +T +D  F+   NV++S+KFAT  R+
Sbjct: 1381 STNKDIKFHPYHNVVSSTKFATTDRI 1406


>SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)
          Length = 738

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 198 KSRMELSRRKGLQLRLRALRQKSSGRRNRELRTR 299
           K RM+L RR     RLR LRQ+ +  R R  R R
Sbjct: 126 KKRMQLKRRAE---RLRRLRQRQAAARKRRARAR 156


>SB_26219| Best HMM Match : MANEC (HMM E-Value=0.12)
          Length = 307

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
 Frame = +2

Query: 122 MDSSRRNNTDEQRCVLGLQ--DLKISKKVEDGTEQAQGATTSAPSP*AKVVR*AQSRASY 295
           M S+ R+    +RC++GLQ   + ++K   D T+    AT   P P A +   ++S   Y
Sbjct: 92  MMSNARHVVANRRCIIGLQGASIDVTKPDPDATKPHPDAT--KPGPDAALC--SRSAVDY 147

Query: 296 SIILSK 313
           ++ L+K
Sbjct: 148 NVTLAK 153


>SB_40685| Best HMM Match : NPIP (HMM E-Value=1.8)
          Length = 672

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/77 (25%), Positives = 37/77 (48%)
 Frame = +1

Query: 304 TQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASPTRSIDSLSQRS 483
           T+   R+  S   R   ++ S+      VE + S     ++ ++ PASP+RS+ S +   
Sbjct: 521 TRPKPRRSKSPVRRPRSVSPSRLGN-STVEPLPSTEPLSLSYSSRPASPSRSL-SYALDD 578

Query: 484 LSYQTDDLSKFLGTLVR 534
           L+  ++   KF   L+R
Sbjct: 579 LNVTSNSYKKFSDPLLR 595


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,865,597
Number of Sequences: 59808
Number of extensions: 440718
Number of successful extensions: 1169
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)