BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0821 (740 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chlo... 29 3.5 AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo... 29 3.5 U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 28 6.0 AC024801-6|AAP86611.1| 197|Caenorhabditis elegans Hypothetical ... 28 8.0 >U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type chloride channel protein3, isoform a protein. Length = 1001 Score = 29.1 bits (62), Expect = 3.5 Identities = 22/83 (26%), Positives = 37/83 (44%) Frame = +1 Query: 226 RGYNFGSEPLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIAS 405 R F P+ K+ P A + +++N R+ + E+ + ++ ATPKR + + Sbjct: 665 RASRFLIVPVAKNGPQVAKNETLTGLSEENARKILTVEEKQALFDAASLATPKREMSGKT 724 Query: 406 INKRDINTTALPASPTRSIDSLS 474 IN I + RSI LS Sbjct: 725 INPVHIESHHTIGDIFRSITHLS 747 >AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chloride channel CLH-3b protein. Length = 1001 Score = 29.1 bits (62), Expect = 3.5 Identities = 22/83 (26%), Positives = 37/83 (44%) Frame = +1 Query: 226 RGYNFGSEPLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIAS 405 R F P+ K+ P A + +++N R+ + E+ + ++ ATPKR + + Sbjct: 665 RASRFLIVPVAKNGPQVAKNETLTGLSEENARKILTVEEKQALFDAASLATPKREMSGKT 724 Query: 406 INKRDINTTALPASPTRSIDSLS 474 IN I + RSI LS Sbjct: 725 INPVHIESHHTIGDIFRSITHLS 747 >U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1 protein. Length = 2427 Score = 28.3 bits (60), Expect = 6.0 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = -3 Query: 615 RAGDNMVVVVNAVHRNNLRFRKQAVGIAHQGSQEFRKI 502 R +N+ NA+ R+ L RK+ +G +HQG+Q FR I Sbjct: 774 RKQENLQQRYNAL-RDPLEKRKRKLGESHQGNQLFRDI 810 >AC024801-6|AAP86611.1| 197|Caenorhabditis elegans Hypothetical protein Y50D7A.11 protein. Length = 197 Score = 27.9 bits (59), Expect = 8.0 Identities = 11/32 (34%), Positives = 21/32 (65%) Frame = +3 Query: 132 QGETIPMNNGVYLVFKI*KFQKKSRMELSRRK 227 + +++PM NGV+ + KI +F ++E+ R K Sbjct: 162 EAKSVPMQNGVWNLVKICEFWGTDKIEIFREK 193 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,240,884 Number of Sequences: 27780 Number of extensions: 342621 Number of successful extensions: 898 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 855 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 896 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1745954468 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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