Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0821
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type  chlo...    29   3.5  
AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type chlo...    29   3.5  
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei...    28   6.0  
AC024801-6|AAP86611.1|  197|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U28943-16|AAK68291.1| 1001|Caenorhabditis elegans Clc-type
           chloride channel protein3, isoform a protein.
          Length = 1001

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = +1

Query: 226 RGYNFGSEPLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIAS 405
           R   F   P+ K+ P  A    +   +++N R+  +  E+  +  ++  ATPKR  +  +
Sbjct: 665 RASRFLIVPVAKNGPQVAKNETLTGLSEENARKILTVEEKQALFDAASLATPKREMSGKT 724

Query: 406 INKRDINTTALPASPTRSIDSLS 474
           IN   I +        RSI  LS
Sbjct: 725 INPVHIESHHTIGDIFRSITHLS 747


>AF319614-1|AAG49524.1| 1001|Caenorhabditis elegans CLC-type
           chloride channel CLH-3b protein.
          Length = 1001

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/83 (26%), Positives = 37/83 (44%)
 Frame = +1

Query: 226 RGYNFGSEPLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIAS 405
           R   F   P+ K+ P  A    +   +++N R+  +  E+  +  ++  ATPKR  +  +
Sbjct: 665 RASRFLIVPVAKNGPQVAKNETLTGLSEENARKILTVEEKQALFDAASLATPKREMSGKT 724

Query: 406 INKRDINTTALPASPTRSIDSLS 474
           IN   I +        RSI  LS
Sbjct: 725 INPVHIESHHTIGDIFRSITHLS 747


>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
           protein.
          Length = 2427

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -3

Query: 615 RAGDNMVVVVNAVHRNNLRFRKQAVGIAHQGSQEFRKI 502
           R  +N+    NA+ R+ L  RK+ +G +HQG+Q FR I
Sbjct: 774 RKQENLQQRYNAL-RDPLEKRKRKLGESHQGNQLFRDI 810


>AC024801-6|AAP86611.1|  197|Caenorhabditis elegans Hypothetical
           protein Y50D7A.11 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 132 QGETIPMNNGVYLVFKI*KFQKKSRMELSRRK 227
           + +++PM NGV+ + KI +F    ++E+ R K
Sbjct: 162 EAKSVPMQNGVWNLVKICEFWGTDKIEIFREK 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,240,884
Number of Sequences: 27780
Number of extensions: 342621
Number of successful extensions: 898
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)