Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0821
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.2  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 453 EINRFLITKVAELSN*RSFEIPGNP 527
           E+   L+TKVAE      F I GNP
Sbjct: 657 ELTSLLLTKVAEDRPLPEFYIGGNP 681


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 404 LSINGILIRLLSL 442
           LSING LIR++++
Sbjct: 163 LSINGALIRIIAI 175


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 404 LSINGILIRLLSL 442
           LSING LIR++++
Sbjct: 129 LSINGALIRIIAI 141


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +2

Query: 404 LSINGILIRLLSL 442
           LSING LIR++++
Sbjct: 39  LSINGALIRIIAI 51


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 571 TVNSVHHNHHIITSSTNRVYH 633
           T+   HH+HH  T S   +++
Sbjct: 346 TMGPPHHHHHHQTQSLQHLHY 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,187
Number of Sequences: 438
Number of extensions: 4379
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)