Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0821
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61460.1 68418.m07712 structural maintenance of chromosomes (...    28   5.7  
At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.7  
At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.7  
At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.7  
At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein ...    28   5.7  
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo...    28   5.7  
At1g78650.1 68414.m09166 expressed protein weak similarity to DN...    28   7.5  
At1g54920.2 68414.m06269 expressed protein                             27   9.9  

>At5g61460.1 68418.m07712 structural maintenance of chromosomes
           (SMC) family protein very strong similarity to SMC-like
           protein (MIM) [Arabidopsis thaliana] GI:5880614;
           contains Pfam profile PF02463: RecF/RecN/SMC N terminal
           domain
          Length = 1057

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 609 GDNMVVVVNAVHRNNLRFRKQAVG 538
           GD ++ ++ A+ RN+ RFRK  +G
Sbjct: 454 GDRVINLLQAIERNHRRFRKPPIG 477


>At3g16520.3 68416.m02110 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 462

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = +1

Query: 292 VLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASP 450
           VLD T   T   Y FY       +  F  P   ET    N +DI T  +P  P
Sbjct: 125 VLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDIPTVHIPGVP 177


>At3g16520.2 68416.m02109 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 446

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = +1

Query: 292 VLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASP 450
           VLD T   T   Y FY       +  F  P   ET    N +DI T  +P  P
Sbjct: 125 VLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDIPTVHIPGVP 177


>At3g16520.1 68416.m02108 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 451

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/53 (33%), Positives = 21/53 (39%)
 Frame = +1

Query: 292 VLDNTQQNTRQDYSFYERSNVIASSKFATPKRVETIASINKRDINTTALPASP 450
           VLD T   T   Y FY       +  F  P   ET    N +DI T  +P  P
Sbjct: 125 VLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNLKDIPTVHIPGVP 177


>At1g55110.1 68414.m06294 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 455

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 78  HLKHHESSQVFGFRSSTQNI 19
           H  HH++ Q  GF SS+QNI
Sbjct: 241 HHHHHQTQQNIGFSSSSQNI 260


>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
           similarity to mannosidase [gi:5359712] from Cellulomonas
           fimi
          Length = 944

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 382 WESQIWTKLSHLIVHKNYN 326
           W SQ+WTK + +++ KN N
Sbjct: 640 WSSQMWTKYTGVLIWKNQN 658


>At1g78650.1 68414.m09166 expressed protein weak similarity to DNA
           polymerase delta subunit 3 (DNA polymerase delta subunit
           p66) (Swiss-Prot:Q15054) [Homo sapiens]
          Length = 509

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = +1

Query: 244 SEPLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNVIASSKFATPK--RVETIASINKR 417
           SE  G  +P   +   +     + +++D      ++V AS+  +T K   + + A +N  
Sbjct: 344 SEDSGPEKPDADVSPEIKSEEPEASKEDRQ--NTASVDASTTLSTEKIQAIGSEAEVNPS 401

Query: 418 DINTTALPASPTR 456
              TTA+P+SP R
Sbjct: 402 KRRTTAVPSSPKR 414


>At1g54920.2 68414.m06269 expressed protein
          Length = 890

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 193 KKSRGWN*AGARGYNFGSEPLGKSRPVGAIESFVLDNTQQNTRQDYSFYERSNV 354
           K+S GW      G+ FG EP+ K     + +S V   T++      SF    +V
Sbjct: 303 KESNGW------GFGFGFEPVSKLETTNSFQSSVEKETKKMENGSISFPSNGDV 350


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,191,050
Number of Sequences: 28952
Number of extensions: 309171
Number of successful extensions: 780
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)