Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0820
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    28   1.2  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   3.7  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   3.7  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    26   3.7  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    26   3.7  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    26   5.0  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.0  
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|...    26   5.0  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    25   6.5  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 232 RDVRRAT*RHHLAKEHLRESQTP-DERAPRTGTLMELDRDERKWKCSSASIGPP 390
           R+VR A  R  +  EHLRE Q   +    R G+  E++R  +++     +I  P
Sbjct: 221 REVREARQRLAMVMEHLRERQEQRNLELQRNGSFEEIERARQRFALLGDNIREP 274


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 360 EVFLSFHRSTLTAADLK 410
           E+F SFHRS++T+A +K
Sbjct: 619 EMFNSFHRSSVTSASIK 635


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 104 NVLYITGRLLKAFQIEFNWYQL-ASWVNLTEQWP 202
           N L +TG  LK + I  + +Q+ A+W    E WP
Sbjct: 121 NFLAVTGTFLKIYLIRISNFQIVATWTG-HEDWP 153


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 349 RRDPIPSACRFAEPVHQGFDFL 284
           R+ P+P    + +PVHQG + L
Sbjct: 71  RKRPVPKGQTYGKPVHQGVNHL 92


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 349 RRDPIPSACRFAEPVHQGFDFL 284
           R+ P+P    + +PVHQG + L
Sbjct: 71  RKRPVPKGQTYGKPVHQGVNHL 92


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -1

Query: 436 KLIVKGRKIFRSAAVRVDRWKLRNTSTCARRDPIPSACRFAEPVHQGFD 290
           KL + G  IFRS   +   +    +S C    P+ +   FA PV    D
Sbjct: 171 KLAMVGTFIFRSVRGKFQLFGATYSSACMSWFPLNAPLAFATPVFSAID 219


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +2

Query: 221 IYHHETYEEPHNDTTSLKNIYEKVKPLMNGLREPAR*WN-WIATSAS 358
           I+H  T E   N  +S   + EK+   M G       W+ W+   AS
Sbjct: 409 IFHGVTIESMQNGLSSKDTVTEKIPKNMTGTNIAQHKWHQWVDREAS 455


>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +2

Query: 179 VNLTEQWPFRTSWIIYHHETYEEPHNDTTSLKNIYEKVKPLMNGLREPAR*WNWIATSAS 358
           +NL+        W+     +YE+     T + ++Y+K+ P    L    +  +  ++ A 
Sbjct: 217 INLSTTTDGLPVWMEESQVSYEDVKGVLTLIDSLYKKINPSKQALPIDQKNGSHASSVAP 276

Query: 359 GSVPQLPSVHPHRC-RSEDLPALHDQLRSIHQESD*RGTRPDE 484
           G+   L SV      + ++     D   S++ E+  + T  D+
Sbjct: 277 GTPSSLASVSTQATPQHQNSSGRTDSFHSLNTETPSKSTVDDQ 319


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 309 GSANRHA-DGIGSRRAQVEVFLSFHRSTLTAADLKIFLPFTINLDPYI 449
           G A R   D +  RRA  E     +   +T  D+K+FLP    L  YI
Sbjct: 204 GVAERFGVDEVTLRRALFEQMGGAYPELITRPDIKVFLPPIGGLTAYI 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,282,392
Number of Sequences: 5004
Number of extensions: 45743
Number of successful extensions: 112
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)