Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0820
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0387 + 16585969-16586102,16586427-16586502,16586941-165869...    29   3.8  
07_03_1000 - 23220878-23221821,23222164-23223001                       28   5.0  
01_06_1071 - 34289609-34292941                                         28   5.0  
08_02_1615 + 28257275-28258428,28258523-28259144                       28   6.7  
06_03_1512 - 30688098-30688133,30688401-30688537,30688744-306888...    28   6.7  
05_03_0267 - 11316227-11316495,11316589-11316853,11317247-11317351     27   8.8  
02_05_0600 - 30273080-30274692,30274709-30274949                       27   8.8  

>08_02_0387 +
           16585969-16586102,16586427-16586502,16586941-16586996,
           16587257-16587774,16587855-16588015,16588129-16588317,
           16588428-16588566,16588659-16588948
          Length = 520

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +3

Query: 306 TGSANRHADGI-GSRRAQVEVFLSFHRSTLTAADLKIFLPFTINLDPYIKKVIKEE 470
           +GSA  H     G+RR  +   LSF      A   +      +NL+P I++V++EE
Sbjct: 21  SGSAEEHQQRRHGARR--LRPVLSFRSVVRRAVAAETIQQIVLNLEPVIRRVVREE 74


>07_03_1000 - 23220878-23221821,23222164-23223001
          Length = 593

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -1

Query: 481 VWACSSLITFLMYGSKLIVKGRKIFRSAAVRVDRWKLRNTSTCARRDPI-PSACR 320
           VW  +S +   ++       GRK +  A  R+  W+ R      R +PI P  CR
Sbjct: 529 VWPRASAMAEALWSGNRDATGRKRYAEATDRLTDWRHRMVGRGVRAEPIQPLWCR 583


>01_06_1071 - 34289609-34292941
          Length = 1110

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 23/60 (38%), Positives = 33/60 (55%)
 Frame = +2

Query: 245 EPHNDTTSLKNIYEKVKPLMNGLREPAR*WNWIATSASGSVPQLPSVHPHRCRSEDLPAL 424
           +PH D   LK +  K  P   G+R P+    W+A+S    +P+L ++H   CRS  LPAL
Sbjct: 741 QPHLD---LKELVIKGFP---GVRFPS----WLASSF---LPKLQTIHICNCRSTRLPAL 787


>08_02_1615 + 28257275-28258428,28258523-28259144
          Length = 591

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 94  PPHERALHHRSPPQSIP 144
           PPH   LHH   PQS P
Sbjct: 33  PPHSHLLHHHHSPQSHP 49


>06_03_1512 -
           30688098-30688133,30688401-30688537,30688744-30688834,
           30689265-30690815
          Length = 604

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/59 (32%), Positives = 23/59 (38%)
 Frame = +1

Query: 223 LPPRDVRRAT*RHHLAKEHLRESQTPDERAPRTGTLMELDRDERKWKCSSASIGPPSPL 399
           LPP  +  A      A  HL  S +P         L +LD   R    SS+S   PS L
Sbjct: 85  LPPLPLLAAAFSAGFATRHLAPSPSPTHSRRLAALLADLDAQLRALSSSSSSTADPSLL 143


>05_03_0267 - 11316227-11316495,11316589-11316853,11317247-11317351
          Length = 212

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +2

Query: 86  HMTRLMNVLYITGRLLKAFQIEFNWYQLASWVNLTEQWPFRTSWIIYHHETYEEPHNDTT 265
           H+++++    I+G +L        WYQ    V     WP     +I   E  E  H  T 
Sbjct: 32  HISQILENFMISGVVLHLIGDAAQWYQSFKLVTPVHDWPHFCQAVIEEFEC-ETEHETTF 90

Query: 266 SLK 274
           +L+
Sbjct: 91  ALQ 93


>02_05_0600 - 30273080-30274692,30274709-30274949
          Length = 617

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 352 RKWKCSSASIGPPSPLPI*RSSC 420
           R W  +S+S G PSPLP   S+C
Sbjct: 412 RCWASTSSSTGLPSPLPTGVSAC 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,559,664
Number of Sequences: 37544
Number of extensions: 370353
Number of successful extensions: 1199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)