Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0820
         (610 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)               69   2e-12
SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   2e-12
SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)               34   0.10 
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  31   0.55 
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)                       28   5.1  
SB_313| Best HMM Match : Beta_elim_lyase (HMM E-Value=2.7)             28   5.1  

>SB_10579| Best HMM Match : Extensin_2 (HMM E-Value=0.28)
          Length = 815

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/75 (40%), Positives = 47/75 (62%)
 Frame = +2

Query: 95  RLMNVLYITGRLLKAFQIEFNWYQLASWVNLTEQWPFRTSWIIYHHETYEEPHNDTTSLK 274
           RLMN++ +T RLL+A  IE++W +LA+W +L + WP++TSW++   E       D  SLK
Sbjct: 89  RLMNIVSLTCRLLRARNIEYSWKRLAAWASLADGWPYKTSWLVLLIEDSNTHIRDNMSLK 148

Query: 275 NIYEKVKPLMNGLRE 319
           ++YE     M  + E
Sbjct: 149 DLYEATLSAMPVINE 163



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = +3

Query: 360 EVFLSFHRSTLTAADLKIFLPFTINLDPYIKKVIKE 467
           E FLS H+  LTA+D++ FL  T++LD  +++ + E
Sbjct: 176 ETFLSSHQPLLTASDIRRFLLCTVHLDHSLRRQMVE 211


>SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 30/75 (40%), Positives = 47/75 (62%)
 Frame = +2

Query: 95   RLMNVLYITGRLLKAFQIEFNWYQLASWVNLTEQWPFRTSWIIYHHETYEEPHNDTTSLK 274
            RLMN++ +T RLL+A  IE++W +LA+W +L + WP++TSW++   E       D  SLK
Sbjct: 843  RLMNIVSLTCRLLRARNIEYSWKRLAAWASLADGWPYKTSWLVLLIEDSNTHIRDNMSLK 902

Query: 275  NIYEKVKPLMNGLRE 319
            ++YE     M  + E
Sbjct: 903  DLYEATLSAMPVINE 917



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = +3

Query: 360  EVFLSFHRSTLTAADLKIFLPFTINLDPYIKKVIKE 467
            E FLS H+  LTA+D++ FL  T++LD  +++ + E
Sbjct: 930  ETFLSSHQPLLTASDIRRFLLCTVHLDHSLRRQMVE 965


>SB_21535| Best HMM Match : Band_41 (HMM E-Value=3.7e-24)
          Length = 2278

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 22/58 (37%), Positives = 29/58 (50%)
 Frame = +3

Query: 327 ADGIGSRRAQVEVFLSFHRSTLTAADLKIFLPFTINLDPYIKKVIKEEHAQTNGEDEM 500
           A  +G+ + QV+ F  +  S     DLK  LP        I K IKEEH + NG DE+
Sbjct: 216 ASQLGAIQIQVQ-FGDYEESKYKLIDLKEVLPKEYVKSKNIDKKIKEEHRKFNGLDEL 272


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 199  PLFRQIHPRSQLIPVKFYLECFEEATCDVEHVHEAGHVRG-LTSLK*SSVSMTRP 38
            P+   +   +  +P+K + +CF  + C  EH H+  H R  +T  +  SV++ RP
Sbjct: 1532 PILNNVELGNHTLPMK-HPQCFMGSVCSQEHEHDKIHRRNRMTLYREMSVNILRP 1585


>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1449

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/47 (34%), Positives = 18/47 (38%)
 Frame = +2

Query: 92  TRLMNVLYITGRLLKAFQIEFNWYQLASWVNLTEQWPFRTSWIIYHH 232
           T L+N       L     + F W   A W   TE     TSW I HH
Sbjct: 541 TTLLNGTRQASSLKSVSNMLFAWMVQAEWPYATENSCDNTSWSIAHH 587


>SB_7505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 584

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
 Frame = +2

Query: 86  HMTRLMNVLYITGRLL----KAFQIEFNW-YQLASWVNLTEQWPFRTSWIIYH--HETYE 244
           +M+R M VL++   +L      F     W Y  A W  ++ QW + +  ++ H  H  + 
Sbjct: 452 YMSRTM-VLHVRTMVLHFPPNGFTFPAQWFYMSAQWFYMSAQWFYMSHTMVLHVPHNGFT 510

Query: 245 EPHNDTT 265
            PHN  T
Sbjct: 511 CPHNGFT 517


>SB_27105| Best HMM Match : GDC-P (HMM E-Value=0)
          Length = 767

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 202 WPLFRQIHPRSQLIPVKFYLECFEE 128
           WP F  IHP + +   K YL+ ++E
Sbjct: 385 WPRFADIHPYAPIQQAKGYLQLYDE 409


>SB_313| Best HMM Match : Beta_elim_lyase (HMM E-Value=2.7)
          Length = 384

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 202 WPLFRQIHPRSQLIPVKFYLECFEE 128
           WP F  IHP + +   K YL+ ++E
Sbjct: 130 WPRFADIHPYAPIQQAKGYLQLYDE 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,112,604
Number of Sequences: 59808
Number of extensions: 371254
Number of successful extensions: 1353
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)