Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0820
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    70   2e-12
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    70   2e-12
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    70   2e-12
Z81485-6|CAB03979.1|  784|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL032652-1|CAA21709.1|  317|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U42437-5|AAA83499.1|  302|Caenorhabditis elegans Dumpy : shorter...    27   7.9  
M23559-1|AAA27994.1|  302|Caenorhabditis elegans protein ( C.ele...    27   7.9  
AF067936-2|AAC19213.1|  527|Caenorhabditis elegans Hypothetical ...    27   7.9  
AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen prot...    27   7.9  

>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
            protein F36H1.2c protein.
          Length = 1427

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/69 (43%), Positives = 45/69 (65%)
 Frame = +2

Query: 89   MTRLMNVLYITGRLLKAFQIEFNWYQLASWVNLTEQWPFRTSWIIYHHETYEEPHNDTTS 268
            M R++N L +TGRL++AF+I+F+W  L  WV+L EQWP R  W+I   +   E HN+   
Sbjct: 952  MRRIVNALTLTGRLMRAFEIDFSWMSLGHWVSLLEQWPSRMCWLI---DRALEVHNNQLL 1008

Query: 269  LKNIYEKVK 295
            L  +Y ++K
Sbjct: 1009 LSEVYYQLK 1017



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +3

Query: 390  LTAADLKIFLPFTINLDPYIKKVIKE 467
            LT   +K F+P T +LDPY++K+I+E
Sbjct: 1051 LTVGHVKKFVPCTSSLDPYLRKLIRE 1076


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein
            F36H1.2b protein.
          Length = 1379

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/69 (43%), Positives = 45/69 (65%)
 Frame = +2

Query: 89   MTRLMNVLYITGRLLKAFQIEFNWYQLASWVNLTEQWPFRTSWIIYHHETYEEPHNDTTS 268
            M R++N L +TGRL++AF+I+F+W  L  WV+L EQWP R  W+I   +   E HN+   
Sbjct: 923  MRRIVNALTLTGRLMRAFEIDFSWMSLGHWVSLLEQWPSRMCWLI---DRALEVHNNQLL 979

Query: 269  LKNIYEKVK 295
            L  +Y ++K
Sbjct: 980  LSEVYYQLK 988



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +3

Query: 390  LTAADLKIFLPFTINLDPYIKKVIKE 467
            LT   +K F+P T +LDPY++K+I+E
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRE 1047


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein
            F36H1.2a protein.
          Length = 1398

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 30/69 (43%), Positives = 45/69 (65%)
 Frame = +2

Query: 89   MTRLMNVLYITGRLLKAFQIEFNWYQLASWVNLTEQWPFRTSWIIYHHETYEEPHNDTTS 268
            M R++N L +TGRL++AF+I+F+W  L  WV+L EQWP R  W+I   +   E HN+   
Sbjct: 923  MRRIVNALTLTGRLMRAFEIDFSWMSLGHWVSLLEQWPSRMCWLI---DRALEVHNNQLL 979

Query: 269  LKNIYEKVK 295
            L  +Y ++K
Sbjct: 980  LSEVYYQLK 988



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +3

Query: 390  LTAADLKIFLPFTINLDPYIKKVIKE 467
            LT   +K F+P T +LDPY++K+I+E
Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRE 1047


>Z81485-6|CAB03979.1|  784|Caenorhabditis elegans Hypothetical
           protein C49F5.6 protein.
          Length = 784

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 265 LAKEHLRESQTPDERAPRTGTLMELDRD 348
           L K HL +S TP  R P T   +  D D
Sbjct: 416 LRKRHLEDSSTPSSRGPSTPAKLITDED 443


>AL032652-1|CAA21709.1|  317|Caenorhabditis elegans Hypothetical
           protein Y63D3A.2 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 330 DGIGSRRAQVEVFLSFHRSTLTAADLKIFL 419
           D IG     +EVF+ F  S+LT  ++ +FL
Sbjct: 197 DLIGMNMMHIEVFMMFDHSSLTHREINLFL 226


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
            F20C5.2b protein.
          Length = 1130

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 292  QTPDERAPRTGTLMELDRDERKWKCSSASIGPP-SPLPI*RSSCPS 426
            +TP  R          DR+ +K+KCS   + PP SP  I +S+  S
Sbjct: 1049 ETPRTRRKLISVRRLKDRNRKKFKCSMKRLHPPTSPSKISKSASSS 1094


>U42437-5|AAA83499.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 13 protein.
          Length = 302

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 568 SFDVGCLGCCGAPHAGPRGCP 506
           +FD GC GCC     GP+G P
Sbjct: 94  NFDSGCEGCC---QPGPQGAP 111


>M23559-1|AAA27994.1|  302|Caenorhabditis elegans protein (
           C.elegans collagen (dpy-13) gene, complete cds. ).
          Length = 302

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 568 SFDVGCLGCCGAPHAGPRGCP 506
           +FD GC GCC     GP+G P
Sbjct: 94  NFDSGCEGCC---QPGPQGAP 111


>AF067936-2|AAC19213.1|  527|Caenorhabditis elegans Hypothetical
           protein C24G6.6 protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 372 SFHRSTLTAADLKIFLPFTINLDPYIKKVIKEE 470
           +F    +   D+K FL FT  LDP  + + K +
Sbjct: 121 AFGNQNVQEKDIKTFLDFTSKLDPKYRSIAKHD 153


>AC006743-4|AAF60502.1|  291|Caenorhabditis elegans Collagen protein
           109 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 559 VGCLGCCGAPHAGPRGCP 506
           VGC GCC   H G  G P
Sbjct: 87  VGCAGCCKPGHPGRPGLP 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,150
Number of Sequences: 27780
Number of extensions: 276678
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)