BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0820 (610 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p... 70 2e-12 Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr... 70 2e-12 Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr... 70 2e-12 Z81485-6|CAB03979.1| 784|Caenorhabditis elegans Hypothetical pr... 28 4.5 AL032652-1|CAA21709.1| 317|Caenorhabditis elegans Hypothetical ... 28 4.5 Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr... 27 7.9 U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter... 27 7.9 M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.ele... 27 7.9 AF067936-2|AAC19213.1| 527|Caenorhabditis elegans Hypothetical ... 27 7.9 AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen prot... 27 7.9 >Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical protein F36H1.2c protein. Length = 1427 Score = 69.7 bits (163), Expect = 2e-12 Identities = 30/69 (43%), Positives = 45/69 (65%) Frame = +2 Query: 89 MTRLMNVLYITGRLLKAFQIEFNWYQLASWVNLTEQWPFRTSWIIYHHETYEEPHNDTTS 268 M R++N L +TGRL++AF+I+F+W L WV+L EQWP R W+I + E HN+ Sbjct: 952 MRRIVNALTLTGRLMRAFEIDFSWMSLGHWVSLLEQWPSRMCWLI---DRALEVHNNQLL 1008 Query: 269 LKNIYEKVK 295 L +Y ++K Sbjct: 1009 LSEVYYQLK 1017 Score = 33.1 bits (72), Expect = 0.16 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +3 Query: 390 LTAADLKIFLPFTINLDPYIKKVIKE 467 LT +K F+P T +LDPY++K+I+E Sbjct: 1051 LTVGHVKKFVPCTSSLDPYLRKLIRE 1076 >Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical protein F36H1.2b protein. Length = 1379 Score = 69.7 bits (163), Expect = 2e-12 Identities = 30/69 (43%), Positives = 45/69 (65%) Frame = +2 Query: 89 MTRLMNVLYITGRLLKAFQIEFNWYQLASWVNLTEQWPFRTSWIIYHHETYEEPHNDTTS 268 M R++N L +TGRL++AF+I+F+W L WV+L EQWP R W+I + E HN+ Sbjct: 923 MRRIVNALTLTGRLMRAFEIDFSWMSLGHWVSLLEQWPSRMCWLI---DRALEVHNNQLL 979 Query: 269 LKNIYEKVK 295 L +Y ++K Sbjct: 980 LSEVYYQLK 988 Score = 33.1 bits (72), Expect = 0.16 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +3 Query: 390 LTAADLKIFLPFTINLDPYIKKVIKE 467 LT +K F+P T +LDPY++K+I+E Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRE 1047 >Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical protein F36H1.2a protein. Length = 1398 Score = 69.7 bits (163), Expect = 2e-12 Identities = 30/69 (43%), Positives = 45/69 (65%) Frame = +2 Query: 89 MTRLMNVLYITGRLLKAFQIEFNWYQLASWVNLTEQWPFRTSWIIYHHETYEEPHNDTTS 268 M R++N L +TGRL++AF+I+F+W L WV+L EQWP R W+I + E HN+ Sbjct: 923 MRRIVNALTLTGRLMRAFEIDFSWMSLGHWVSLLEQWPSRMCWLI---DRALEVHNNQLL 979 Query: 269 LKNIYEKVK 295 L +Y ++K Sbjct: 980 LSEVYYQLK 988 Score = 33.1 bits (72), Expect = 0.16 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +3 Query: 390 LTAADLKIFLPFTINLDPYIKKVIKE 467 LT +K F+P T +LDPY++K+I+E Sbjct: 1022 LTVGHVKKFVPCTSSLDPYLRKLIRE 1047 >Z81485-6|CAB03979.1| 784|Caenorhabditis elegans Hypothetical protein C49F5.6 protein. Length = 784 Score = 28.3 bits (60), Expect = 4.5 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +1 Query: 265 LAKEHLRESQTPDERAPRTGTLMELDRD 348 L K HL +S TP R P T + D D Sbjct: 416 LRKRHLEDSSTPSSRGPSTPAKLITDED 443 >AL032652-1|CAA21709.1| 317|Caenorhabditis elegans Hypothetical protein Y63D3A.2 protein. Length = 317 Score = 28.3 bits (60), Expect = 4.5 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 330 DGIGSRRAQVEVFLSFHRSTLTAADLKIFL 419 D IG +EVF+ F S+LT ++ +FL Sbjct: 197 DLIGMNMMHIEVFMMFDHSSLTHREINLFL 226 >Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein F20C5.2b protein. Length = 1130 Score = 27.5 bits (58), Expect = 7.9 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = +1 Query: 292 QTPDERAPRTGTLMELDRDERKWKCSSASIGPP-SPLPI*RSSCPS 426 +TP R DR+ +K+KCS + PP SP I +S+ S Sbjct: 1049 ETPRTRRKLISVRRLKDRNRKKFKCSMKRLHPPTSPSKISKSASSS 1094 >U42437-5|AAA83499.1| 302|Caenorhabditis elegans Dumpy : shorter than wild-typeprotein 13 protein. Length = 302 Score = 27.5 bits (58), Expect = 7.9 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 Query: 568 SFDVGCLGCCGAPHAGPRGCP 506 +FD GC GCC GP+G P Sbjct: 94 NFDSGCEGCC---QPGPQGAP 111 >M23559-1|AAA27994.1| 302|Caenorhabditis elegans protein ( C.elegans collagen (dpy-13) gene, complete cds. ). Length = 302 Score = 27.5 bits (58), Expect = 7.9 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -1 Query: 568 SFDVGCLGCCGAPHAGPRGCP 506 +FD GC GCC GP+G P Sbjct: 94 NFDSGCEGCC---QPGPQGAP 111 >AF067936-2|AAC19213.1| 527|Caenorhabditis elegans Hypothetical protein C24G6.6 protein. Length = 527 Score = 27.5 bits (58), Expect = 7.9 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = +3 Query: 372 SFHRSTLTAADLKIFLPFTINLDPYIKKVIKEE 470 +F + D+K FL FT LDP + + K + Sbjct: 121 AFGNQNVQEKDIKTFLDFTSKLDPKYRSIAKHD 153 >AC006743-4|AAF60502.1| 291|Caenorhabditis elegans Collagen protein 109 protein. Length = 291 Score = 27.5 bits (58), Expect = 7.9 Identities = 10/18 (55%), Positives = 10/18 (55%) Frame = -1 Query: 559 VGCLGCCGAPHAGPRGCP 506 VGC GCC H G G P Sbjct: 87 VGCAGCCKPGHPGRPGLP 104 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,080,150 Number of Sequences: 27780 Number of extensions: 276678 Number of successful extensions: 926 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 864 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 926 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1311096392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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