Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0820
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel...    30   1.4  
At4g08350.1 68417.m01380 KOW domain-containing transcription fac...    29   1.8  
At3g30751.1 68416.m03917 hypothetical protein                          29   3.2  
At5g51290.1 68418.m06358 ceramide kinase-related contains weak s...    28   4.2  
At4g38440.1 68417.m05432 expressed protein                             27   7.4  
At1g75030.1 68414.m08715 pathogenesis-related thaumatin family p...    27   7.4  
At1g27200.1 68414.m03313 expressed protein contains Pfam PF01697...    27   7.4  
At5g21080.1 68418.m02510 expressed protein predicted proteins - ...    27   9.7  
At1g67020.1 68414.m07620 hypothetical protein                          27   9.7  
At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel...    27   9.7  
At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel...    27   9.7  

>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
           putative (CNGC16) similar to cyclic nucleotide and
           calmodulin-regulated ion channel (cngc6) GI:4581207 from
           [Arabidopsis thaliana]
          Length = 705

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 493 SSPFVWACSSLITFLMYGSKLIVKGRKIFRSAAVRVDRWKLRNTST 356
           SS  +++C   +  L++ S LI   +   +S   R+D W++R   T
Sbjct: 350 SSETIFSCFICVAGLVFFSHLIGNVQNYLQSTTARLDEWRVRRRDT 395


>At4g08350.1 68417.m01380 KOW domain-containing transcription factor
            family protein chromatin structural protein homolog
            Supt5hp - Mus musculus,PID:g2754752
          Length = 1029

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 160  VSVGFVGESDGTMAIPNVVDHLPPR 234
            VS+G  GE D  MA+P+ ++ +PPR
Sbjct: 954  VSLGSSGEGDTIMALPSELEIIPPR 978


>At3g30751.1 68416.m03917 hypothetical protein
          Length = 134

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
 Frame = -3

Query: 431 DREGQ--EDLQIGSGEGGPMEAEEHFHLRSSRSNSISVPVRGARSSGV*LSRKCSLARWC 258
           + EGQ  E L + SG+   +  ++ F L+     S  + V  A SSG  LS   S    C
Sbjct: 20  ESEGQAPESLSLESGDCSRLLRKQSFALQVVDCRSARIIVEAAGSSGHELSMTLSRPLCC 79

Query: 257 RYVALRTSRGGR*STTFG 204
           R   + + +  R ST+ G
Sbjct: 80  RREVVLSQKRTRLSTSRG 97


>At5g51290.1 68418.m06358 ceramide kinase-related contains weak
           similarity to ceramide kinases (GI:21624342) [Mus
           musculus]
          Length = 608

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -1

Query: 520 PRGCPAPISSSPFVWACSSLITFLMYGSKLIVKGRKIFRSAAVRVDRWKLRNTST 356
           PR    P  S+  +  C++     +  +  I+ GRK+F  A ++V RWK  +TST
Sbjct: 320 PRFGLIPAGSTDAIVMCTTGARDPVTSALHIILGRKLFLDA-MQVVRWKTASTST 373


>At4g38440.1 68417.m05432 expressed protein
          Length = 1465

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 508  PAPISSSPFVWACSSLITFLMYGSKLI 428
            P+P+ S P VW   +L T L+ G  +I
Sbjct: 1195 PSPVVSVPLVWKFHALSTVLLVGMDII 1221


>At1g75030.1 68414.m08715 pathogenesis-related thaumatin family
           protein identical to thaumatin-like protein [Arabidopsis
           thaliana] GI:2435406; contains Pfam profile: PF00314
           Thaumatin family
          Length = 246

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 544 CCGAPHAGPRGCPAPISSSPFVWACSSLITF 452
           CC   HA P+ C     SS F  AC S  ++
Sbjct: 191 CCTGAHATPQTCSPTYYSSMFKNACPSAYSY 221


>At1g27200.1 68414.m03313 expressed protein contains Pfam PF01697:
           Domain of unknown function
          Length = 575

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 161 YQLASWVNLTEQWPFRTSWIIYHHETYEEPH--NDTTSLKNIYEKVKPLMNGLREPAR-* 331
           ++L     L  Q PF   WI+YH     E     D  S   I E+++ L +     +R  
Sbjct: 291 HELCVCTMLWNQAPFLREWIMYHSWLGVERWFIYDNNSDDGIQEEIELLSSENYNVSRHV 350

Query: 332 WNWIATSASG 361
           W WI T  +G
Sbjct: 351 WPWIKTQEAG 360


>At5g21080.1 68418.m02510 expressed protein predicted proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 980

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +2

Query: 242 EEPHNDTTS-LKNIYEKVKPLMNGLREPAR*WNWIAT-SASGSVPQLPSVHPH 394
           EEP N+T+S L  +        +  R P+   + +A  ++SGS P+ PS+ PH
Sbjct: 563 EEPKNNTSSVLSRLKSSYSRSQSVKRNPS---SMVADQNSSGSSPEKPSLSPH 612


>At1g67020.1 68414.m07620 hypothetical protein
          Length = 659

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -3

Query: 392 EGGPMEAEEHFHLRSSRSNSISVPVRGARSSGV*LSRKCSLAR 264
           EG  +E  EH       S S S+P RGA  S + L  + SL R
Sbjct: 66  EGKRVEQGEHSCQSPRHSFSSSMPQRGAGESPILLDNRSSLIR 108


>At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel,
           putative (CNGC8) similar to cyclic nucleotide and
           calmodulin-regulated ion channel GI:4581207 from
           (Arabidopsis thaliana)
          Length = 728

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +1

Query: 103 ERALHHRSPPQSIPNRI*LVSVGFVGESDGTMAIPNVVDHLPPRDVRRAT*RH 261
           E+ +HHRS PQ++  R+         E+ G +   N+V  L P+D+RR   RH
Sbjct: 422 EQWMHHRSLPQNLRERVRRYDQYKWLETRG-VDEENIVQSL-PKDLRRDIKRH 472


>At1g15990.1 68414.m01918 cyclic nucleotide-regulated ion channel,
           putative (CNGC7) similar to cyclic nucleotide and
           calmodulin-regulated ion channel protein GI:4581207 from
           [Arabidopsis thaliana]
          Length = 709

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +1

Query: 103 ERALHHRSPPQSIPNRI*LVSVGFVGESDGTMAIPNVVDHLPPRDVRRAT*RH 261
           E+ +HHRS PQ++  R+         E+ G +   N+V  L P+D+RR   RH
Sbjct: 412 EQWMHHRSLPQNLRERVRRYDQYKWLETRG-VDEENIVQSL-PKDLRRDIKRH 462


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,536,549
Number of Sequences: 28952
Number of extensions: 267130
Number of successful extensions: 805
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)