BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0818 (740 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 144 2e-35 SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 32 0.099 SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 28 1.6 SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 27 2.1 SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 27 2.8 SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 2.8 SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 26 4.9 SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ... 26 4.9 SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3... 25 8.6 >SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr 2|||Manual Length = 538 Score = 144 bits (348), Expect = 2e-35 Identities = 59/85 (69%), Positives = 74/85 (87%) Frame = +3 Query: 3 LKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGIYDPMVPDAECLKVVTEILEALDIGQ 182 +KR+HIAKVYRRD PAMT+GR REFYQCDFDIAG YDPM+PD+E LKV+ E L+AL++G Sbjct: 155 IKRFHIAKVYRRDQPAMTKGRMREFYQCDFDIAGNYDPMIPDSEALKVLVEALDALEVGN 214 Query: 183 YILKVNHRRLLDGMFEACGVPADKL 257 Y +K+NHR++LDG+F CGVP DK+ Sbjct: 215 YTIKLNHRKILDGIFTVCGVPDDKI 239 Score = 77.0 bits (181), Expect = 3e-15 Identities = 56/163 (34%), Positives = 78/163 (47%), Gaps = 19/163 (11%) Frame = +2 Query: 278 DKLDKSPWEEVRTEMINEKGV*PDAADRIGEYVRLNGSTXXXXXXXXXXXXXXXXAALEG 457 DKLDK PWE+VR EM+ EKG+ + AD+I EYV L G +A+ Sbjct: 247 DKLDKLPWEDVRREMVVEKGLKEEVADKIKEYVLLKGDRSLLDKLEADSLLSSNSSAVAA 306 Query: 458 VEAIKTLLQYCELFGIKIRFCLI*VLPE--D*IITLVL-SMKQCLHNLLKLEMRNKRL-- 622 ++ L Y E FG+ RF L D ++ ++ + +K K+ Sbjct: 307 FNDMRLLFDYLEAFGVLDRFSFDMSLARGLDYYTGIIYEAVTEASAPKIKSSAEKKKSAD 366 Query: 623 -------DPSLG------GGRYDNLVGMFDS-KNKQVPCVGVS 709 D S+G GGRYDNLVGMF + KN ++PCVG+S Sbjct: 367 PEADRSNDDSIGVGSIAAGGRYDNLVGMFAAKKNAKIPCVGIS 409 Score = 46.4 bits (105), Expect = 4e-06 Identities = 19/24 (79%), Positives = 22/24 (91%) Frame = +1 Query: 508 DKILFDLSLARGLDYYTGVIYEAV 579 D+ FD+SLARGLDYYTG+IYEAV Sbjct: 324 DRFSFDMSLARGLDYYTGIIYEAV 347 >SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharomyces pombe|chr 1|||Manual Length = 706 Score = 31.9 bits (69), Expect = 0.099 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Frame = -3 Query: 678 LESNMPTRLSYLPPPSDGSNRLFLISNFNRLCKHCFIDNTSVII*SSGKTQIKQNLILMP 499 +E N+PT++ +LP P +G + + + + C D ++ +S + + ++ Sbjct: 327 IEKNLPTQVGFLPIPWNGGSNTYSPTALAAIRAACATDINFDVVNASNLDSMYTSGKIVA 386 Query: 498 KSSQYC---SKVLIASTPSNAAFTLDXXXXXXXXXXXSVLP--FKRTYSPILSAASGYTP 334 +Q C S++L ST +N T + P + TY I+S A +P Sbjct: 387 MYAQVCLVASRILGDSTLTNTGLTKLKQAMARFTTNTQMYPLVYDTTYKGIISTAGYSSP 446 Query: 333 FS 328 + Sbjct: 447 LA 448 >SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1174 Score = 27.9 bits (59), Expect = 1.6 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = -3 Query: 582 KHCFIDNTSVII*SSGKTQIKQNLILMPKSS 490 K CF+D T+ I S+ I N IL PK S Sbjct: 344 KLCFVDETNFPIISTPSLVISSNSILYPKDS 374 >SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1117 Score = 27.5 bits (58), Expect = 2.1 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +3 Query: 27 VYRRDNPAMTRGRYREFYQCDFDIAGIYDPMV---PDAECLKVVTEILEAL 170 +Y A++ +YRE +F G+ V PDA CL + TEIL ++ Sbjct: 245 IYTSPIKALSNQKYRELL-AEFGDVGLMTGDVTINPDATCLVMTTEILRSM 294 >SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 217 Score = 27.1 bits (57), Expect = 2.8 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -2 Query: 715 PXTHTYTWHLFVFGVKHAD 659 P HT+TW +FV GV D Sbjct: 34 PTDHTHTWRIFVEGVDGED 52 >SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosaccharomyces pombe|chr 3|||Manual Length = 1213 Score = 27.1 bits (57), Expect = 2.8 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Frame = +3 Query: 3 LKRYHIAK-VYRRDNPAMTRGRYREFYQCDFDIAGIY--DPMV-PDAECLKVVTEILEAL 170 L + H+ K +Y A++ ++R+F F+ GI D V P+ CL + TEIL ++ Sbjct: 318 LAQKHMTKAIYTSPIKALSNQKFRDFKH-KFEDVGILTGDVQVNPEGSCLLMTTEILRSM 376 >SPBC609.04 |caf5||spermine family transmembrane transporter Caf5|Schizosaccharomyces pombe|chr 2|||Manual Length = 531 Score = 26.2 bits (55), Expect = 4.9 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = -2 Query: 547 LILWQDSNQTESYLNAKEFTIL*QSFD-CFYTF 452 ++ W D+N E+ LN + L +FD CF TF Sbjct: 62 IVRWDDANDPENPLNWPLWAKLVVTFDICFLTF 94 >SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 390 Score = 26.2 bits (55), Expect = 4.9 Identities = 13/45 (28%), Positives = 20/45 (44%) Frame = -3 Query: 708 LTPTHGTCLFLESNMPTRLSYLPPPSDGSNRLFLISNFNRLCKHC 574 +TP G+ F+ NM S G RL+ ++ FN + C Sbjct: 295 VTPNDGSAQFVVYNMSGNPKKQTTSSKGPTRLYEVARFNCTTRGC 339 >SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3|||Manual Length = 555 Score = 25.4 bits (53), Expect = 8.6 Identities = 10/33 (30%), Positives = 18/33 (54%) Frame = +2 Query: 620 LDPSLGGGRYDNLVGMFDSKNKQVPCVGVSXWR 718 L+P++ G +G+F + + +P VG WR Sbjct: 365 LNPNIKGAGEKKQLGLFYPQREILPAVGPGTWR 397 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,908,890 Number of Sequences: 5004 Number of extensions: 56654 Number of successful extensions: 133 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 124 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 132 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 351258950 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -