Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0818
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...   144   2e-35
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    32   0.099
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    28   1.6  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    27   2.1  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    27   2.8  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   2.8  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    26   4.9  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   4.9  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    25   8.6  

>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score =  144 bits (348), Expect = 2e-35
 Identities = 59/85 (69%), Positives = 74/85 (87%)
 Frame = +3

Query: 3   LKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGIYDPMVPDAECLKVVTEILEALDIGQ 182
           +KR+HIAKVYRRD PAMT+GR REFYQCDFDIAG YDPM+PD+E LKV+ E L+AL++G 
Sbjct: 155 IKRFHIAKVYRRDQPAMTKGRMREFYQCDFDIAGNYDPMIPDSEALKVLVEALDALEVGN 214

Query: 183 YILKVNHRRLLDGMFEACGVPADKL 257
           Y +K+NHR++LDG+F  CGVP DK+
Sbjct: 215 YTIKLNHRKILDGIFTVCGVPDDKI 239



 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 56/163 (34%), Positives = 78/163 (47%), Gaps = 19/163 (11%)
 Frame = +2

Query: 278 DKLDKSPWEEVRTEMINEKGV*PDAADRIGEYVRLNGSTXXXXXXXXXXXXXXXXAALEG 457
           DKLDK PWE+VR EM+ EKG+  + AD+I EYV L G                  +A+  
Sbjct: 247 DKLDKLPWEDVRREMVVEKGLKEEVADKIKEYVLLKGDRSLLDKLEADSLLSSNSSAVAA 306

Query: 458 VEAIKTLLQYCELFGIKIRFCLI*VLPE--D*IITLVL-SMKQCLHNLLKLEMRNKRL-- 622
              ++ L  Y E FG+  RF     L    D    ++  ++ +     +K     K+   
Sbjct: 307 FNDMRLLFDYLEAFGVLDRFSFDMSLARGLDYYTGIIYEAVTEASAPKIKSSAEKKKSAD 366

Query: 623 -------DPSLG------GGRYDNLVGMFDS-KNKQVPCVGVS 709
                  D S+G      GGRYDNLVGMF + KN ++PCVG+S
Sbjct: 367 PEADRSNDDSIGVGSIAAGGRYDNLVGMFAAKKNAKIPCVGIS 409



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +1

Query: 508 DKILFDLSLARGLDYYTGVIYEAV 579
           D+  FD+SLARGLDYYTG+IYEAV
Sbjct: 324 DRFSFDMSLARGLDYYTGIIYEAV 347


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 31.9 bits (69), Expect = 0.099
 Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 5/122 (4%)
 Frame = -3

Query: 678 LESNMPTRLSYLPPPSDGSNRLFLISNFNRLCKHCFIDNTSVII*SSGKTQIKQNLILMP 499
           +E N+PT++ +LP P +G +  +  +    +   C  D    ++ +S    +  +  ++ 
Sbjct: 327 IEKNLPTQVGFLPIPWNGGSNTYSPTALAAIRAACATDINFDVVNASNLDSMYTSGKIVA 386

Query: 498 KSSQYC---SKVLIASTPSNAAFTLDXXXXXXXXXXXSVLP--FKRTYSPILSAASGYTP 334
             +Q C   S++L  ST +N   T              + P  +  TY  I+S A   +P
Sbjct: 387 MYAQVCLVASRILGDSTLTNTGLTKLKQAMARFTTNTQMYPLVYDTTYKGIISTAGYSSP 446

Query: 333 FS 328
            +
Sbjct: 447 LA 448


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 582 KHCFIDNTSVII*SSGKTQIKQNLILMPKSS 490
           K CF+D T+  I S+    I  N IL PK S
Sbjct: 344 KLCFVDETNFPIISTPSLVISSNSILYPKDS 374


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 27  VYRRDNPAMTRGRYREFYQCDFDIAGIYDPMV---PDAECLKVVTEILEAL 170
           +Y     A++  +YRE    +F   G+    V   PDA CL + TEIL ++
Sbjct: 245 IYTSPIKALSNQKYRELL-AEFGDVGLMTGDVTINPDATCLVMTTEILRSM 294


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 715 PXTHTYTWHLFVFGVKHAD 659
           P  HT+TW +FV GV   D
Sbjct: 34  PTDHTHTWRIFVEGVDGED 52


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +3

Query: 3   LKRYHIAK-VYRRDNPAMTRGRYREFYQCDFDIAGIY--DPMV-PDAECLKVVTEILEAL 170
           L + H+ K +Y     A++  ++R+F    F+  GI   D  V P+  CL + TEIL ++
Sbjct: 318 LAQKHMTKAIYTSPIKALSNQKFRDFKH-KFEDVGILTGDVQVNPEGSCLLMTTEILRSM 376


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 547 LILWQDSNQTESYLNAKEFTIL*QSFD-CFYTF 452
           ++ W D+N  E+ LN   +  L  +FD CF TF
Sbjct: 62  IVRWDDANDPENPLNWPLWAKLVVTFDICFLTF 94


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -3

Query: 708 LTPTHGTCLFLESNMPTRLSYLPPPSDGSNRLFLISNFNRLCKHC 574
           +TP  G+  F+  NM          S G  RL+ ++ FN   + C
Sbjct: 295 VTPNDGSAQFVVYNMSGNPKKQTTSSKGPTRLYEVARFNCTTRGC 339


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 620 LDPSLGGGRYDNLVGMFDSKNKQVPCVGVSXWR 718
           L+P++ G      +G+F  + + +P VG   WR
Sbjct: 365 LNPNIKGAGEKKQLGLFYPQREILPAVGPGTWR 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,908,890
Number of Sequences: 5004
Number of extensions: 56654
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)