Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0818
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286...   133   1e-31
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924...    45   7e-05
02_05_0790 - 31768131-31768269,31768343-31768503,31768845-317689...    36   0.045
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378...    29   5.1  

>05_01_0366 -
           2867953-2868252,2868329-2868469,2868808-2869089,
           2869177-2869569,2869796-2869975,2870149-2871510
          Length = 885

 Score =  133 bits (322), Expect = 1e-31
 Identities = 59/84 (70%), Positives = 71/84 (84%)
 Frame = +3

Query: 3   LKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGIYDPMVPDAECLKVVTEILEALDIGQ 182
           LKRY IAKVYRRDNP+  +GRYREFYQCDFDIAG+Y+ M PD E +KV+TE+L+ LDIG 
Sbjct: 541 LKRYQIAKVYRRDNPS--KGRYREFYQCDFDIAGVYETMEPDFEVIKVLTELLDQLDIGT 598

Query: 183 YILKVNHRRLLDGMFEACGVPADK 254
           Y +K+NHR+LLDGM E CGVP +K
Sbjct: 599 YEIKLNHRKLLDGMLEICGVPPEK 622



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 23/32 (71%), Positives = 27/32 (84%)
 Frame = +1

Query: 511 KILFDLSLARGLDYYTGVIYEAVLTQPIKIGN 606
           KI+FDLSLARGLDYYTGVIYEAV     ++G+
Sbjct: 711 KIVFDLSLARGLDYYTGVIYEAVFKGTTQVGS 742



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
 Frame = +2

Query: 278  DKLDKSPWEEVRTEMINEKGV*PDAADRIGEYVRLNGSTXXXXXXXXXXXXXXXXAALEG 457
            DKLDK  +E+V+ E+++EKG+  + AD+IG+ V+  G                    +  
Sbjct: 631  DKLDKQTFEQVKKELVDEKGISNETADKIGDLVKTRGPPLEVLLELRKEGSKF----MGN 686

Query: 458  VEAIKTLLQYCELFGIKIRFCLI*VLPED*IITLVLSMKQCLHNLLKLEMRNKRLDPSLG 637
              ++  L +   LF    +   I  +  D  ++L   +      + +   +      S+ 
Sbjct: 687  AGSVTALNELEILFKALDKANAIGKIVFD--LSLARGLDYYTGVIYEAVFKGTTQVGSIA 744

Query: 638  GG-RYDNLVGMFDSKNKQVPCVGVS 709
             G RYDNLVGMF    KQVP VGVS
Sbjct: 745  AGGRYDNLVGMF--SGKQVPAVGVS 767


>04_04_0350 + 24591002-24591123,24592020-24592091,24592343-24592448,
            24593138-24593242,24593693-24593815,24594163-24594630,
            24595226-24595351,24595430-24595516,24595615-24595701,
            24595807-24595903,24596519-24596636,24596923-24596995,
            24597504-24597566,24597666-24597832,24598444-24598631,
            24598909-24599057,24599193-24599442,24599597-24599855,
            24599977-24600073,24606696-24606776,24606914-24606970,
            24607264-24607395,24607476-24607562,24607941-24608049,
            24608134-24608270,24608841-24608945,24609566-24609654,
            24609757-24609859,24609960-24610064,24610282-24610293,
            24611013-24611078
          Length = 1279

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = +3

Query: 6    KRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGIYDPMVPDAECLKVVTEI-LEALDIGQ 182
            KRY ++ V+RR   A+       F Q DFDI G   P +P+AE +KV  ++     D   
Sbjct: 924  KRYEVSWVHRR---AVGHSIPYRFLQGDFDIIGGASP-IPEAEIVKVTLDVGAHFYDPKA 979

Query: 183  YILKVNHRRLLDGMFEACGVPADK 254
             I+++NH +L + +    GVP ++
Sbjct: 980  IIIRLNHSKLAEAVCSWAGVPQER 1003


>02_05_0790 -
           31768131-31768269,31768343-31768503,31768845-31768973,
           31769770-31769912,31770215-31770332,31771070-31771144,
           31771528-31771620,31771750-31771879,31772038-31772126,
           31772411-31772506,31772610-31772900
          Length = 487

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +1

Query: 508 DKILFDLSLARGLDYYTGVIYEA 576
           D I FD S+ RGL YYTG+++EA
Sbjct: 324 DWICFDASVVRGLAYYTGIVFEA 346


>11_01_0490 -
           3782195-3782305,3782929-3783021,3783199-3783294,
           3783373-3783521,3783886-3784039,3784110-3784205,
           3784290-3784379,3784856-3785014,3785150-3785371,
           3785552-3785668,3785753-3785824,3786768-3786836,
           3786947-3787051,3787248-3787562,3787814-3788809
          Length = 947

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +3

Query: 27  VYRRDNPAMTRGRYREFYQCDFDIAGIYDPMV---PDAECLKVVTEILEAL 170
           +Y     A++  +YRE  Q +F   G+    V   P+A CL + TEIL A+
Sbjct: 130 IYTSPLKALSNQKYRELSQ-EFSDVGLMTGDVTLQPNATCLVMTTEILRAM 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,536,817
Number of Sequences: 37544
Number of extensions: 355603
Number of successful extensions: 752
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)