Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0818
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)         148   4e-36
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   9e-07
SB_52437| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.020
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)                   29   3.0  
SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)
          Length = 518

 Score =  148 bits (359), Expect = 4e-36
 Identities = 64/84 (76%), Positives = 72/84 (85%)
 Frame = +3

Query: 3   LKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGIYDPMVPDAECLKVVTEILEALDIGQ 182
           +KRYHIAKVYRRDNPAMTRGRYREFYQCD DIAG YD M+PDAEC+K+V EIL  L++G 
Sbjct: 170 IKRYHIAKVYRRDNPAMTRGRYREFYQCDIDIAGQYDAMIPDAECVKIVAEILADLELGD 229

Query: 183 YILKVNHRRLLDGMFEACGVPADK 254
           + +KVNHRRLLDGMF  CGVP  K
Sbjct: 230 FKIKVNHRRLLDGMFAVCGVPEGK 253



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 61/150 (40%), Positives = 80/150 (53%), Gaps = 13/150 (8%)
 Frame = +2

Query: 278 DKLDKSPWEEVRTEMINEKGV*PDAADRIGEYVRLNGSTXXXXXXXXXXXXXXXXAALEG 457
           DKLDK+ WEEVR EM++EKG+   AADRIGEYV+L+G                   A E 
Sbjct: 262 DKLDKATWEEVRKEMVDEKGLEGSAADRIGEYVKLSGGMNLVERLAQDGELMKNKNAKEA 321

Query: 458 VEAIKTLLQYCELFGI--KIRFCLI*VLPED*IITLVLS--MKQCLHNLLKLEMRNKRL- 622
           +E ++ LLQYCELF +  K+ F L      D    ++    +   L +L K E  N  + 
Sbjct: 322 LEDMELLLQYCELFNVTDKVLFDLSLARGLDYYTGVIYEAILTGKLPDLGKAEKVNTSIG 381

Query: 623 ---DP-----SLGGGRYDNLVGMFDSKNKQ 688
              +P       GGGRYDNLVGMFD K ++
Sbjct: 382 FPGEPVGVGSVAGGGRYDNLVGMFDPKGRK 411



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 28/42 (66%), Positives = 33/42 (78%), Gaps = 1/42 (2%)
 Frame = +1

Query: 508 DKILFDLSLARGLDYYTGVIYEAVLTQPI-KIGNEEQTVGSI 630
           DK+LFDLSLARGLDYYTGVIYEA+LT  +  +G  E+   SI
Sbjct: 339 DKVLFDLSLARGLDYYTGVIYEAILTGKLPDLGKAEKVNTSI 380


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
 Frame = +3

Query: 3    LKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG-IYDPMVPDAECLKVVTEILE---AL 170
            LKR+ I  VYR  +  +     +E Y+C FDI     +  VPDAE +  V EI+     L
Sbjct: 1391 LKRFDIGCVYR--DKRILGAHPKELYECAFDIISPTPEGNVPDAEVISAVAEIIREFPCL 1448

Query: 171  DIGQYILKVNHRRLLDGMFEACGVPADK 254
            D   Y +++NH  LL  +  + GVP ++
Sbjct: 1449 DRRSYYIRINHAGLLRAVLSSYGVPEER 1476


>SB_52437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +2

Query: 635 GGGRYDNLVGMFDSKNKQV 691
           GGGRYDNLVGMFD K +++
Sbjct: 11  GGGRYDNLVGMFDPKGRKL 29


>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 725 TLNAXYSHLHMAPVCFWSQTCRRGYRIFRRPAMDPTVC 612
           TLN      +  P+   SQ CR G+ I R+P+ DP  C
Sbjct: 491 TLNHSLITWNNTPISRCSQACRAGFYILRKPS-DPPCC 527


>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
          Length = 665

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = -2

Query: 241 TPQASNIPSSNLLWFTLRIYCPMSRASRISVTTFKHSASGTIGSYIPAMSKSH**NSLYL 62
           TP +S+IP  + L+ T  IY P+S     S    +H    T+  Y P  S  H  + LY 
Sbjct: 261 TPPSSSIPHRHHLYTTAIIYTPLS-----SPIPHRHHLYTTVIIYTPPSSSIHHCHHLYP 315

Query: 61  PLVM 50
            +++
Sbjct: 316 TVII 319


>SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 227

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 3   LKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGIYD 113
           +KRY+   +Y  D   +T   YR    C FD A  YD
Sbjct: 50  VKRYYFTVLYDADRLRLTPFSYRNKVFCRFDAAVHYD 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,659,936
Number of Sequences: 59808
Number of extensions: 416193
Number of successful extensions: 829
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)