BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0818 (740 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21) 148 4e-36 SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 9e-07 SB_52437| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.020 SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7 SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 29 3.0 SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9 >SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21) Length = 518 Score = 148 bits (359), Expect = 4e-36 Identities = 64/84 (76%), Positives = 72/84 (85%) Frame = +3 Query: 3 LKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGIYDPMVPDAECLKVVTEILEALDIGQ 182 +KRYHIAKVYRRDNPAMTRGRYREFYQCD DIAG YD M+PDAEC+K+V EIL L++G Sbjct: 170 IKRYHIAKVYRRDNPAMTRGRYREFYQCDIDIAGQYDAMIPDAECVKIVAEILADLELGD 229 Query: 183 YILKVNHRRLLDGMFEACGVPADK 254 + +KVNHRRLLDGMF CGVP K Sbjct: 230 FKIKVNHRRLLDGMFAVCGVPEGK 253 Score = 89.8 bits (213), Expect = 2e-18 Identities = 61/150 (40%), Positives = 80/150 (53%), Gaps = 13/150 (8%) Frame = +2 Query: 278 DKLDKSPWEEVRTEMINEKGV*PDAADRIGEYVRLNGSTXXXXXXXXXXXXXXXXAALEG 457 DKLDK+ WEEVR EM++EKG+ AADRIGEYV+L+G A E Sbjct: 262 DKLDKATWEEVRKEMVDEKGLEGSAADRIGEYVKLSGGMNLVERLAQDGELMKNKNAKEA 321 Query: 458 VEAIKTLLQYCELFGI--KIRFCLI*VLPED*IITLVLS--MKQCLHNLLKLEMRNKRL- 622 +E ++ LLQYCELF + K+ F L D ++ + L +L K E N + Sbjct: 322 LEDMELLLQYCELFNVTDKVLFDLSLARGLDYYTGVIYEAILTGKLPDLGKAEKVNTSIG 381 Query: 623 ---DP-----SLGGGRYDNLVGMFDSKNKQ 688 +P GGGRYDNLVGMFD K ++ Sbjct: 382 FPGEPVGVGSVAGGGRYDNLVGMFDPKGRK 411 Score = 56.8 bits (131), Expect = 2e-08 Identities = 28/42 (66%), Positives = 33/42 (78%), Gaps = 1/42 (2%) Frame = +1 Query: 508 DKILFDLSLARGLDYYTGVIYEAVLTQPI-KIGNEEQTVGSI 630 DK+LFDLSLARGLDYYTGVIYEA+LT + +G E+ SI Sbjct: 339 DKVLFDLSLARGLDYYTGVIYEAILTGKLPDLGKAEKVNTSI 380 >SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1822 Score = 51.2 bits (117), Expect = 9e-07 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 4/88 (4%) Frame = +3 Query: 3 LKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAG-IYDPMVPDAECLKVVTEILE---AL 170 LKR+ I VYR + + +E Y+C FDI + VPDAE + V EI+ L Sbjct: 1391 LKRFDIGCVYR--DKRILGAHPKELYECAFDIISPTPEGNVPDAEVISAVAEIIREFPCL 1448 Query: 171 DIGQYILKVNHRRLLDGMFEACGVPADK 254 D Y +++NH LL + + GVP ++ Sbjct: 1449 DRRSYYIRINHAGLLRAVLSSYGVPEER 1476 >SB_52437| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 50 Score = 36.7 bits (81), Expect = 0.020 Identities = 14/19 (73%), Positives = 17/19 (89%) Frame = +2 Query: 635 GGGRYDNLVGMFDSKNKQV 691 GGGRYDNLVGMFD K +++ Sbjct: 11 GGGRYDNLVGMFDPKGRKL 29 >SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1020 Score = 30.3 bits (65), Expect = 1.7 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -1 Query: 725 TLNAXYSHLHMAPVCFWSQTCRRGYRIFRRPAMDPTVC 612 TLN + P+ SQ CR G+ I R+P+ DP C Sbjct: 491 TLNHSLITWNNTPISRCSQACRAGFYILRKPS-DPPCC 527 >SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) Length = 665 Score = 29.5 bits (63), Expect = 3.0 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = -2 Query: 241 TPQASNIPSSNLLWFTLRIYCPMSRASRISVTTFKHSASGTIGSYIPAMSKSH**NSLYL 62 TP +S+IP + L+ T IY P+S S +H T+ Y P S H + LY Sbjct: 261 TPPSSSIPHRHHLYTTAIIYTPLS-----SPIPHRHHLYTTVIIYTPPSSSIHHCHHLYP 315 Query: 61 PLVM 50 +++ Sbjct: 316 TVII 319 >SB_10710| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 227 Score = 28.3 bits (60), Expect = 6.9 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +3 Query: 3 LKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGIYD 113 +KRY+ +Y D +T YR C FD A YD Sbjct: 50 VKRYYFTVLYDADRLRLTPFSYRNKVFCRFDAAVHYD 86 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 21,659,936 Number of Sequences: 59808 Number of extensions: 416193 Number of successful extensions: 829 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 784 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 828 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1998111622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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