Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0818
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   3.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 251 ICGNSTSFKHSIK*SSVVHF 192
           ICG S  + H +K   V H+
Sbjct: 236 ICGKSFGYNHVLKLHQVAHY 255


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 562 HQCNNLILWQDSNQTESYLNAKEFT 488
           H+  NL     S+   +Y+N K+FT
Sbjct: 257 HKTQNLYYSAMSSHNLNYVNTKQFT 281


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 609 LISNFNRLCKHCFIDNTSVII 547
           L+SN+NRL +    +N +V++
Sbjct: 28  LLSNYNRLIRPVSNNNDTVVV 48


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 702  PTHGTCLFLESNMPTRLSYLPPPSDGSN 619
            P H T     ++   R+S++ PP   +N
Sbjct: 1084 PPHDTTCTTLTSQTIRISWMSPPLSAAN 1111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,471
Number of Sequences: 438
Number of extensions: 3639
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)