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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0817
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...   126   3e-30
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    99   5e-22
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    85   7e-18
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    85   9e-18
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    71   2e-13
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    67   2e-12
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    66   4e-12
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    65   7e-12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    63   3e-11
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    61   1e-10
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    61   1e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    60   4e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    60   4e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    59   5e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    55   1e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    50   4e-07
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    50   4e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    49   5e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    48   1e-06
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    45   1e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    42   8e-05
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    42   1e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    40   4e-04
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    30   0.26 
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    30   0.34 
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    29   0.60 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    28   1.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    28   1.4  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    26   5.6  
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    26   5.6  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   7.4  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.4  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    25   7.4  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    25   9.8  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   9.8  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   9.8  

>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score =  126 bits (304), Expect = 3e-30
 Identities = 67/128 (52%), Positives = 80/128 (62%)
 Frame = +3

Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
           GPI LVLAPTRELA QIQQ    FG +S +RNTCV+GG P+  Q RDL RGVEI IATPG
Sbjct: 195 GPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPG 254

Query: 435 RLIDFLEKGTTNLQRCTYLVLDEADVCWIWDLNHKSEKSLSKYAQTDRL*CGQLLGPKK* 614
           RL+D L+   TNL+R TYLVLDEAD         +  K + +     +        PK+ 
Sbjct: 255 RLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEV 314

Query: 615 RNLLRDYL 638
           + L RDYL
Sbjct: 315 QRLARDYL 322



 Score = 79.0 bits (186), Expect = 6e-16
 Identities = 34/45 (75%), Positives = 41/45 (91%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643
           RMLDMGFEPQIRKI++QIRPDRQT+M+SATWPKEV++LA   L +
Sbjct: 280 RMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLND 324



 Score = 73.3 bits (172), Expect = 3e-14
 Identities = 29/57 (50%), Positives = 43/57 (75%)
 Frame = +2

Query: 2   VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 172
           + V G+ V  P+  FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++
Sbjct: 110 IVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGIS 166



 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +1

Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGE 255
           S TGSGKTL+Y LPAIVHIN QP +  G+
Sbjct: 166 SATGSGKTLSYCLPAIVHINAQPLLSPGD 194


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 99.1 bits (236), Expect = 5e-22
 Identities = 52/107 (48%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
 Frame = +3

Query: 198 LHLASHCAHKQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 377
           L +  H   ++P    E  GPIA+++ PTRELA QI +    F     +R  C +GGAP 
Sbjct: 474 LPMFRHIKDQRPLKTGE--GPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPI 531

Query: 378 REQARDLERGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEAD 509
           ++Q  DL+RG EIV+ TPGR+ID L       TNL RCTYLVLDEAD
Sbjct: 532 KDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEAD 578



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 24/43 (55%), Positives = 35/43 (81%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
           RM D+GFEPQ+ +II  IRPDRQT+++SAT+P+ ++ LA  +L
Sbjct: 579 RMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVL 621



 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 17/58 (29%), Positives = 33/58 (56%)
 Frame = +2

Query: 2   VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
           + + G++   P+  + +          + ++GY++PT IQAQ  P   SG++++GVAK
Sbjct: 406 IKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAK 463



 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 15/29 (51%), Positives = 23/29 (79%)
 Frame = +1

Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGE 255
           ++TGSGKT+A++LP   HI +Q P++ GE
Sbjct: 462 AKTGSGKTIAFLLPMFRHIKDQRPLKTGE 490


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 85.4 bits (202), Expect = 7e-18
 Identities = 44/85 (51%), Positives = 54/85 (63%)
 Frame = +3

Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
           GP A+VLAPTRELAQQIQ     F      R   V GG    EQ+  + +G  IV+ATPG
Sbjct: 325 GPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVVATPG 384

Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509
           RL+D LE+    L +CTY+V+DEAD
Sbjct: 385 RLLDCLERRLFVLSQCTYVVMDEAD 409



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 19/58 (32%), Positives = 38/58 (65%)
 Frame = +2

Query: 2   VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
           +++ G ++ NP++ +EEA  P  + + +K + YKEP+ IQ    P+ +  K+L+G+A+
Sbjct: 237 ISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAE 294



 Score = 36.3 bits (80), Expect = 0.004
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGEVRL 264
           ++TGSGKT A+I+P I+ I+  PP+    + L
Sbjct: 293 AETGSGKTAAFIIPLIIAISKLPPLTESNMHL 324



 Score = 30.3 bits (65), Expect = 0.26
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 19/70 (27%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIRPD-------------------RQTLMWSATWPKEVKKLAEG 631
           RMLDMGFE  + KI+  +                      RQT+M+SAT P  V  LA+ 
Sbjct: 410 RMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKS 469

Query: 632 LLGETTFRSI 661
            L E    +I
Sbjct: 470 YLIEPVMLTI 479


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 85.0 bits (201), Expect = 9e-18
 Identities = 39/84 (46%), Positives = 57/84 (67%)
 Frame = +3

Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
           P  L+LAPTREL  QI + +  F + S+VR   V+GGA  R Q R +++G +++ ATPGR
Sbjct: 256 PTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGR 315

Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
           L+D +++G  +L    +LVLDEAD
Sbjct: 316 LVDLIDRGRISLANIKFLVLDEAD 339



 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 4/55 (7%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIR----PDRQTLMWSATWPKEVKKLAEGLLGETTFRSI 661
           RMLDMGFEPQIR I+E        +RQTLM+SAT+P++++ LA   L +  F S+
Sbjct: 340 RMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSV 394



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = +2

Query: 2   VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
           V VSG ++  P+  F       ++ Q +K  GY +PTP+Q    PI  SG++L+  A+
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQ 214


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 36/84 (42%), Positives = 51/84 (60%)
 Frame = +3

Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
           P  LV++PTRELA Q  +        + ++   V+GGAPK EQAR   +   ++I TPGR
Sbjct: 237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR-AAKNASVIIGTPGR 295

Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
           L+D +  G+ +  +  YLVLDEAD
Sbjct: 296 LLDLINDGSIDCSQVGYLVLDEAD 319



 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 21/48 (43%), Positives = 34/48 (70%)
 Frame = +2

Query: 32  PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
           PI  F+E +    +++G+K   YKEPTPIQA  WP  ++G+++VG+A+
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGRDVVGIAE 210



 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 25/49 (51%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIRPD------RQTLMWSATWPKEVKKLAEGLL 637
           RMLD GFE  IR II    PD      RQT+ +SATWP+ V+ LA   L
Sbjct: 320 RMLDTGFEQDIRNIISHT-PDPTRNGSRQTVFFSATWPESVRALAATFL 367



 Score = 28.7 bits (61), Expect = 0.80
 Identities = 10/20 (50%), Positives = 18/20 (90%)
 Frame = +1

Query: 169 SQTGSGKTLAYILPAIVHIN 228
           ++TGSGKT+A+ +PA+ ++N
Sbjct: 209 AETGSGKTVAFGIPALQYLN 228


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 35/82 (42%), Positives = 45/82 (54%)
 Frame = +3

Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
           AL+LAPTRELAQQIQ+V    G    V      GG   R+    L+ GV +V+ TPGR+ 
Sbjct: 90  ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDMAALQAGVHVVVGTPGRVH 149

Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
           D +++           VLDEAD
Sbjct: 150 DMIQRRALPTDAVQMFVLDEAD 171



 Score = 31.1 bits (67), Expect = 0.15
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEV 613
           ML  GF+ QI  I + + P  Q ++ SAT P++V
Sbjct: 173 MLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDV 206


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 34/81 (41%), Positives = 42/81 (51%)
 Frame = +3

Query: 267 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 446
           L+L PTRELA Q  QV    G    V+     GG   R+    L   V IV+ TPGR++D
Sbjct: 116 LILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIVVGTPGRVLD 175

Query: 447 FLEKGTTNLQRCTYLVLDEAD 509
              KG  +   CT  V+DEAD
Sbjct: 176 LAGKGVADFSECTTFVMDEAD 196



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 44  FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 190
           FE+      +  G+   G++ P+PIQ +  PIA+SG++++  AK    K
Sbjct: 46  FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94



 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628
           ++L   F P I +++     +RQ  ++SAT+P  VK   +
Sbjct: 197 KLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMD 236



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 7/23 (30%), Positives = 18/23 (78%)
 Frame = +1

Query: 166 RSQTGSGKTLAYILPAIVHINNQ 234
           R++ G+GKT A+++P++  ++ +
Sbjct: 87  RAKNGTGKTAAFVIPSLEKVDTK 109


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
 Frame = +3

Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
           G  AL+L PTRELA QI +  A  G    +++  + GG     Q+ DL +   +V+ATPG
Sbjct: 75  GIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPG 134

Query: 435 RLIDFL----EKGTTNLQRCTYLVLDEAD 509
           RL D +    E+    L+R  +LV+DEAD
Sbjct: 135 RLADLIRSNGEETIAGLRRIKFLVMDEAD 163



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 169 SQTGSGKTLAYILPAIVHINNQP 237
           ++TGSGKT A+ LP I   +  P
Sbjct: 51  AKTGSGKTAAFALPIIEKWSKDP 73


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
 Frame = +3

Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
           A+VLAPTRELA QI +     G +  VR+  + GG     QA  L +   +++ TPGRL+
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALSKKPHVLVCTPGRLM 176

Query: 444 DFLE--KGTTNLQRCTYLVLDEAD 509
           D LE  KG  +L+   YL++DEAD
Sbjct: 177 DHLENTKG-FSLKNLKYLIMDEAD 199



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
           R+LDM F P I KI++ I  +R+TL++SAT   +V+KL    L
Sbjct: 200 RLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASL 242



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 13/44 (29%), Positives = 29/44 (65%)
 Frame = +2

Query: 44  FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
           F+E    D + +  + +G+K PTPIQ +  P+ ++ ++++G+A+
Sbjct: 48  FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQ 91



 Score = 30.7 bits (66), Expect = 0.20
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 169 SQTGSGKTLAYILPAIVHINNQP 237
           +QTGSGKT A+ LP I  + N P
Sbjct: 90  AQTGSGKTAAFALPVIQELWNNP 112


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
 Frame = +3

Query: 240 YSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 419
           +  R G   ++++PTRELA QI  VA +     +     V GGA +R +A  L +GV ++
Sbjct: 156 FKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLVKGVNLL 215

Query: 420 IATPGRLIDFLE--KGTTNLQRCTYLVLDEAD 509
           +ATPGRL+D L+  KG    +    LV+DEAD
Sbjct: 216 VATPGRLLDHLQNTKGFV-FRNLRSLVIDEAD 246



 Score = 34.3 bits (75), Expect = 0.016
 Identities = 17/40 (42%), Positives = 31/40 (77%), Gaps = 1/40 (2%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIRPD-RQTLMWSATWPKEVKKLA 625
           R+L++GFE ++R+I++ +  + RQTL++SAT   +V+ LA
Sbjct: 247 RILEIGFEDEMRQIMKILPSENRQTLLFSATQTTKVEDLA 286



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = +1

Query: 169 SQTGSGKTLAYILPAI 216
           ++TGSGKTLA+++P I
Sbjct: 133 AKTGSGKTLAFLIPTI 148


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
 Frame = +3

Query: 255 GPIALVLAPTRELAQQIQQVAADFGH---TSYVRNTCVFGGAPKREQARDLERGVEIVIA 425
           G  A+++APTREL QQI  VA    +   + ++ +  V GG  K+ +   + +GV I+I 
Sbjct: 216 GIYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIG 275

Query: 426 TPGRLIDFLEK-GTTNLQRCTYLVLDEAD 509
           TPGRL D LE     ++ +  ++VLDE D
Sbjct: 276 TPGRLADHLENTEALDVSQVRWVVLDEGD 304



 Score = 31.9 bits (69), Expect = 0.085
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 169 SQTGSGKTLAYILPAIVHINNQP 237
           +QTGSGKTLAY+LP +  +   P
Sbjct: 185 AQTGSGKTLAYLLPIVQRLIRLP 207



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
 Frame = +2

Query: 503 G*RMLDMGFEPQIRKIIEQIR------------PDRQ-TLMWSATWPKEVKKLAEGLLGE 643
           G R++DMGFE  + KI+  +             P R+ T++ SAT    VK+L++  L +
Sbjct: 303 GDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKD 362

Query: 644 TTF 652
             +
Sbjct: 363 ALY 365


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
 Frame = +3

Query: 195 GLHLASHCAHKQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAP 374
           G+ +  HC       Y +     ALV+APTRELA QI Q       +  +R   + GG  
Sbjct: 177 GIPILEHCLRNVDAKYVQ-----ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLA 231

Query: 375 KREQARDLERGVEIVIATPGRLIDFLEKG--TTNLQRCTYLVLDEAD 509
            ++Q R L +   +V+ATPGRL   + +   T N ++   LVLDEAD
Sbjct: 232 VQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEAD 278



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 166 RSQTGSGKTLAYILPAIVH 222
           ++ TGSGKTLA+ +P + H
Sbjct: 165 KADTGSGKTLAFGIPILEH 183


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 32/82 (39%), Positives = 44/82 (53%)
 Frame = +3

Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
           AL+L+P RELA Q  +V  DF   + +R+  + GG    EQ   L    +IV+ATPGR +
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKPDIVVATPGRFL 201

Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
               +    L    Y+V DEAD
Sbjct: 202 HLKVEMKLELSSIEYVVFDEAD 223



 Score = 35.9 bits (79), Expect = 0.005
 Identities = 15/40 (37%), Positives = 26/40 (65%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628
           R+ +MGF  Q+ +I+  +   RQTL++SAT P+ +   A+
Sbjct: 224 RLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAK 263



 Score = 33.9 bits (74), Expect = 0.021
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 44  FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
           F+       + + +   G+K PTPIQ +  P+ + G+++VG+A+
Sbjct: 71  FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMAR 114



 Score = 29.5 bits (63), Expect = 0.46
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 169 SQTGSGKTLAYILPAIVHINN 231
           ++TGSGKT A+++P I H+ +
Sbjct: 113 ARTGSGKTAAFVIPMIEHLKS 133


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 31/82 (37%), Positives = 42/82 (51%)
 Frame = +3

Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
           AL+L+PTRELA QIQ V    G    V+     GG       + L+ G  +V  TPGR+ 
Sbjct: 92  ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDYGQHVVSGTPGRVT 151

Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
           D + +     +    L+LDEAD
Sbjct: 152 DMIRRRNLRTRNVKMLILDEAD 173



 Score = 30.7 bits (66), Expect = 0.20
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = +2

Query: 29  NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
           N +  FEE N  + + +G+   GY+ P+ +Q++       G++++  A+
Sbjct: 18  NAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQ 66



 Score = 29.1 bits (62), Expect = 0.60
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 622
           +L+ GF+ QI  I   + P  Q ++ SAT P++V ++
Sbjct: 175 LLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEM 211


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = +3

Query: 267 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 446
           L+L PTRELA Q   VA      + +      GG   + Q ++L +  +IVIATPGR ID
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFID 393

Query: 447 FLEKGT-TNLQRCTYLVLDEAD 509
            +       ++    +V+DEAD
Sbjct: 394 HMRNSQGFTVENIEIMVMDEAD 415



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +2

Query: 44  FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 172
           F+  N    + +G+  +G++ PT IQ +  P+A+ GK++VG A
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAA 303



 Score = 32.3 bits (70), Expect = 0.065
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 622
           RML+ GF  ++ +II+     RQT+++SAT   +V  L
Sbjct: 416 RMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDL 453



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 151 KEFSWRSQTGSGKTLAYILPAIVHINNQP 237
           K+    + TGSGKT A+I+P +  +  +P
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRP 325


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
 Frame = +3

Query: 225 KQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGH--TSYVRNTCVFGGAPKREQARDL 398
           KQ      + G  AL+L PTRELAQQ+  V        + ++R   V   +    Q   L
Sbjct: 78  KQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQRPLL 137

Query: 399 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADVCWIWDLNHKSEKSLSK 560
               +IVIATP R +  +  G   L +  +LV+DEAD+   +  N +  K+LS+
Sbjct: 138 LDLPDIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYN-EDMKTLSR 190



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 14/54 (25%), Positives = 31/54 (57%)
 Frame = +2

Query: 14  GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
           G+   +  + F + N    +Q+ +    +++PT +Q++  P+A+ GK+LV  A+
Sbjct: 6   GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQAR 59



 Score = 33.1 bits (72), Expect = 0.037
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = +1

Query: 151 KEFSWRSQTGSGKTLAYILPAIVHINNQPPI---RRGEVRLLW--SWRLPES*HNKFSKL 315
           K+   +++TGSGKT AY++P +  +  Q  I   +RG   LL   +  L +  +N   KL
Sbjct: 52  KDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKL 111

Query: 316 LQILDTHLMFV 348
                 H+ F+
Sbjct: 112 TAFCSKHIRFI 122


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
 Frame = +3

Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRL 440
           +++L+PTRELA QI + A    + + +R +   GG  K  +   + RG   ++IATPGRL
Sbjct: 115 SVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRL 174

Query: 441 IDFLEKGTTNLQRCT-YLVLDEAD 509
            D L+         T   +LDEAD
Sbjct: 175 EDHLQNPRILESLSTDSFILDEAD 198



 Score = 34.3 bits (75), Expect = 0.016
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIRPDR-QTLMWSATWPKEVKKLAEGLLGETTFRSI 661
           R++DMGF   I  I E +   + + L +SAT P +V  +  G+LG T F+ I
Sbjct: 199 RLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILG-TDFKLI 249


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 30/84 (35%), Positives = 44/84 (52%)
 Frame = +3

Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
           P A+ LAP+RELA+QI  V  + G   Y      FG   K    +  +   +IVI TPG 
Sbjct: 185 PQAICLAPSRELARQIMDVVTEMG--KYTEVKTAFG--IKDSVPKGAKIDAQIVIGTPGT 240

Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
           ++D +++   + +     VLDEAD
Sbjct: 241 VMDLMKRRQLDARDIKVFVLDEAD 264


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = +3

Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
           ALV++PTRELA Q  +     G         + GG   +E+   L R + I++ TPGRL+
Sbjct: 114 ALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR-MNILVCTPGRLL 172

Query: 444 DFLEKGTT-NLQRCTYLVLDEAD 509
             +++    +      L+LDEAD
Sbjct: 173 QHIDQAVNFDTSGLQMLILDEAD 195



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 21/51 (41%), Positives = 29/51 (56%)
 Frame = +2

Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGETTFRSI 661
           R+LDMGF   +  I+  +   RQT+++SAT  K VK LA   L    F S+
Sbjct: 196 RILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISV 246



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +1

Query: 169 SQTGSGKTLAYILPAIVHI 225
           ++TGSGKTLA+I+P I ++
Sbjct: 83  AKTGSGKTLAFIVPLIENL 101


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +3

Query: 267 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR---EQARDLERGVEIVIATPG 434
           LVL  TRELA QI+   A F  +   VR    +GG   +   E  +D  +   IV+ATPG
Sbjct: 123 LVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPG 182

Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509
           RL   + +    +    + VLDE D
Sbjct: 183 RLNALVREKILKVNSVKHFVLDECD 207


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +3

Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK-REQARDLERGVEIVIATPGRL 440
           A+++APTREL +QI + A      + ++   +     K +E+A  L    ++ I TP RL
Sbjct: 118 AIIVAPTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRL 177

Query: 441 IDFLEKGTTNLQRCTYLVLDEAD 509
           +  ++ G  + ++  + V+DEAD
Sbjct: 178 VQAIQTG-LSFEKVEFFVMDEAD 199



 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 175 TGSGKTLAYILPAIVHINNQPP 240
           TGSGKT+AY+ P +  +    P
Sbjct: 92  TGSGKTIAYLFPILQKLQLHVP 113


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
 Frame = +3

Query: 267 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL-----ERGVEIVIATP 431
           +V+ PTREL  Q+ +    +   + ++     G    R +   L     E  ++++++TP
Sbjct: 209 VVIVPTRELTVQVAKTFEYYMSGAGLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTP 268

Query: 432 GRLIDFLEKGTT-NLQRCTYLVLDEAD 509
           GRL+D +    + +LQ   Y+V+DEAD
Sbjct: 269 GRLVDHIRNDESFSLQHLRYMVIDEAD 295



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +1

Query: 175 TGSGKTLAYILPAI 216
           TGSGKTL+Y++P +
Sbjct: 182 TGSGKTLSYVIPIV 195


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
 Frame = +3

Query: 216 CAHKQPTAYSER*GPIALVLAPTRELAQQIQQVAADF---------GHTSYVRNTCVFG- 365
           C  K     ++  G  AL++APTRELA QI  V  +          G    V +  + G 
Sbjct: 59  CFDKVTRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGK 118

Query: 366 GAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
           G    + A   E+   +VI TPGRL + L     + +    L+LDEAD
Sbjct: 119 GTLTNDLASFREKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEAD 164



 Score = 34.3 bits (75), Expect = 0.016
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 44  FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 163
           F+  N   +++  V   G+K+ TP+QA   P+ +  K+LV
Sbjct: 3   FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLV 42



 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSAT 598
           ++DMGF+  ++ II Q+   R+T ++SAT
Sbjct: 166 LIDMGFQRTLQSIISQLPKQRRTGLFSAT 194



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 151 KEFSWRSQTGSGKTLAYILP 210
           K+    + TGSGKTLAY+LP
Sbjct: 39  KDLVVEAVTGSGKTLAYLLP 58


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 23/79 (29%), Positives = 37/79 (46%)
 Frame = +3

Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
           G +   L  TR +++   Q   DF            G  P     R L++G+E VI TP 
Sbjct: 93  GRVERRLVCTRSISRHSNQKLLDFCVECKKHKIKCVGNFPC---GRCLKKGLECVIETPP 149

Query: 435 RLIDFLEKGTTNLQRCTYL 491
           RL+   ++ + NLQR +++
Sbjct: 150 RLLMNKDEISLNLQRLSHM 168


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 154 EFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGEVRLLWSWRLPE 288
           E ++    GSG+TLA + P ++  +N   +     + LW+W L E
Sbjct: 834 ELAFGCVLGSGRTLANLAPMMLITHNASHVPPRPSKSLWNWLLGE 878


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 216 CAHKQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARD 395
           C  K+ + Y +   PI ++ +P  E+    ++V  D     Y+  TC+    P+ E + D
Sbjct: 82  CTLKKGSVYQQ---PIDIIFSPGEEVF--FERVGGDI--PVYLSGTCIITNIPEEEDSSD 134

Query: 396 LE 401
           LE
Sbjct: 135 LE 136


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 175  TGSGKTLAYILPAIVHINNQPP 240
            TG GK+L++++PA++    Q P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP 1236


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 175  TGSGKTLAYILPAIVHINNQPP 240
            TG GK+L++++PA++    Q P
Sbjct: 1215 TGGGKSLSFLIPALIEKKRQTP 1236


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 630 PSASFFTSLGQVADHIKVCLSGRICSMIF 544
           P   +  S GQ+ D + + L+GR+   IF
Sbjct: 597 PKDQYLMSRGQILDQMGMALAGRVSEEIF 625


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +3

Query: 315 AADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR-LIDFL---EKGTTNLQRC 482
           A  FG  S  +  C   G  KR   RD+  G + ++  PG   +D L    K   +L   
Sbjct: 215 APKFGDRSCYQLPCNARGLAKRAILRDVREGADGIMVKPGTPYLDILAMASKLADDLPIA 274

Query: 483 TYLVLDE 503
           TY V  E
Sbjct: 275 TYQVSGE 281


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 554 EQIRPDRQTLMWSATWPKEVKKLAEGLLGETT 649
           +Q+  D +TL     WP +VKK+    +G TT
Sbjct: 226 DQLLDDLETL---PKWPDKVKKMQRNWIGRTT 254


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +1

Query: 133 ADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRRGEVRLLWSWRLPES*HNKFSK 312
           A+  VWK+     +TG   T   I+   +   ++  I+   +R   S       H K SK
Sbjct: 182 AEESVWKDIGLDQETGLSVTAIPIITETLDHAHEQEIKDQSLRFESSLNEANELHGKLSK 241

Query: 313 LLQ 321
           + Q
Sbjct: 242 IQQ 244


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
 Frame = -2

Query: 95  PLSLHLVAHNQENL--LLQSIE 36
           PL LH+V+HN+++L   LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +2

Query: 2   VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
           V V  VE   PI Y            GV  +GY +  P    G P+ ++GK +  V K
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTVGK 310


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 535 WFKSHIQHTSASSRTKYVHRCKLVVPFS-KKSINLPGVAMTISTPLSKSRACS 380
           + K  +   S S  + Y  R  +V P+S +K         T+S+P+SKS + S
Sbjct: 171 YMKKRLPPVSDSDESNYCQRI-IVKPYSSQKDYTQSTHEQTLSSPISKSASVS 222


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 175 TGSGKTLAYILPAIV 219
           TG GK+L Y LPA++
Sbjct: 543 TGGGKSLCYQLPAVI 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,949
Number of Sequences: 5004
Number of extensions: 65600
Number of successful extensions: 281
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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