Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0817
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       73   2e-15
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    25   0.65 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 72.9 bits (171), Expect = 2e-15
 Identities = 35/84 (41%), Positives = 47/84 (55%)
 Frame = +3

Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
           P  ++++PTREL  QI Q    F   S ++    +GG     Q   L  G  I++ATPGR
Sbjct: 274 PQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGR 333

Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
           L+DF+EKG        +LVLDEAD
Sbjct: 334 LLDFVEKGRVKFSSVQFLVLDEAD 357



 Score = 54.4 bits (125), Expect = 9e-10
 Identities = 25/58 (43%), Positives = 35/58 (60%)
 Frame = +2

Query: 2   VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
           V VSG  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+  A+
Sbjct: 184 VNVSGDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQ 241



 Score = 49.2 bits (112), Expect = 3e-08
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
 Frame = +2

Query: 446 FLGKGHNQLTAVHIFSS**G*RMLDMGFEPQIRKII--EQIRP--DRQTLMWSATWPKEV 613
           F+ KG  + ++V         RMLDMGF P I K++  E + P  +RQTLM+SAT+P EV
Sbjct: 337 FVEKGRVKFSSVQFLVLDEADRMLDMGFLPSIEKMVDHETMVPLGERQTLMFSATFPDEV 396

Query: 614 KKLAEGLLGETTFRSI 661
           + LA   L    F ++
Sbjct: 397 QHLARRFLNNYLFLAV 412



 Score = 25.4 bits (53), Expect = 0.49
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 169 SQTGSGKTLAYILPAI 216
           +QTGSGKT A+ +P I
Sbjct: 240 AQTGSGKTAAFAVPII 255


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -1

Query: 357 HTCYEHKMCVQNLQQLAEFVVLTLW*APRPKQSDLTSPNRRLVVYVHNGWQ 205
           H+ +EH    +++Q++  +    +W   R        PN  L V+  + WQ
Sbjct: 124 HSSHEHPWFKKSVQRIKPYDEYYVWRDARIVNGTRQPPNNWLSVFWGSAWQ 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,817
Number of Sequences: 438
Number of extensions: 4285
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)