BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0817 (666 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 127 8e-30 At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 123 1e-28 At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 123 1e-28 At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 111 5e-25 At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 111 5e-25 At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 111 5e-25 At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 103 8e-23 At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 102 2e-22 At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 93 2e-19 At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 92 3e-19 At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 91 8e-19 At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 89 2e-18 At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 87 1e-17 At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 87 1e-17 At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 84 7e-17 At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 83 2e-16 At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 82 4e-16 At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 81 5e-16 At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 80 2e-15 At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 77 1e-14 At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 75 4e-14 At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 74 7e-14 At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 74 7e-14 At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 73 2e-13 At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 72 3e-13 At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 72 3e-13 At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 72 4e-13 At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 71 9e-13 At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 67 9e-12 At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 65 3e-11 At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 65 3e-11 At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 65 5e-11 At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 65 5e-11 At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 64 6e-11 At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 64 1e-10 At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 64 1e-10 At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 62 3e-10 At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 59 2e-09 At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 59 3e-09 At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 59 3e-09 At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 59 3e-09 At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 58 5e-09 At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 58 7e-09 At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 57 9e-09 At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 52 3e-07 At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 51 8e-07 At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 50 1e-06 At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 49 3e-06 At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 48 4e-06 At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 4e-06 At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 48 7e-06 At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 47 1e-05 At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 44 9e-05 At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 42 3e-04 At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 6e-04 At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 41 9e-04 At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 40 0.001 At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 40 0.001 At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 40 0.001 At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 38 0.006 At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 37 0.010 At2g28600.1 68415.m03476 expressed protein 35 0.042 At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 35 0.056 At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 31 0.52 At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo... 29 2.8 At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 4.9 At4g21390.1 68417.m03090 S-locus lectin protein kinase family pr... 28 6.4 At1g11920.1 68414.m01376 pectate lyase family protein similar to... 27 8.5 >At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) similar to ethylene-responsive RNA helicase GI:5669638 from [Lycopersicon esculentum]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 501 Score = 127 bits (306), Expect = 8e-30 Identities = 59/85 (69%), Positives = 69/85 (81%) Frame = +3 Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434 GPI LVLAPTRELA QIQQ A+ FG +S ++ TC++GG PK Q RDL++GVEIVIATPG Sbjct: 172 GPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPG 231 Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509 RLID +E TNL+R TYLVLDEAD Sbjct: 232 RLIDMMESNNTNLRRVTYLVLDEAD 256 Score = 77.4 bits (182), Expect = 8e-15 Identities = 29/58 (50%), Positives = 44/58 (75%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 +TV G ++ P++ F + FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+ Sbjct: 87 ITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAE 144 Score = 75.8 bits (178), Expect = 2e-14 Identities = 32/43 (74%), Positives = 38/43 (88%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 RMLDMGF+PQIRKI+ IRPDRQTL WSATWPKEV++L++ L Sbjct: 257 RMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFL 299 Score = 46.4 bits (105), Expect = 2e-05 Identities = 18/29 (62%), Positives = 25/29 (86%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGE 255 ++TGSGKTL+Y+LPAIVH+N QP + G+ Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHGD 171 >At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase, putative (RH30) strong similarity to ethylene-responsive RNA helicase [Lycopersicon esculentum] GI:5669638; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 591 Score = 123 bits (296), Expect = 1e-28 Identities = 61/85 (71%), Positives = 68/85 (80%) Frame = +3 Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434 GPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPG Sbjct: 238 GPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 297 Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509 RLID LE TNL+R TYLVLDEAD Sbjct: 298 RLIDMLECQHTNLKRVTYLVLDEAD 322 Score = 79.0 bits (186), Expect = 3e-15 Identities = 34/43 (79%), Positives = 38/43 (88%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 RMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA L Sbjct: 323 RMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFL 365 Score = 75.4 bits (177), Expect = 3e-14 Identities = 27/58 (46%), Positives = 46/58 (79%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 ++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+G+A+ Sbjct: 153 ISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210 Score = 41.9 bits (94), Expect = 4e-04 Identities = 16/23 (69%), Positives = 22/23 (95%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHINNQP 237 ++TGSGKTLAY+LPA+VH++ QP Sbjct: 209 AETGSGKTLAYLLPALVHVSAQP 231 >At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase, putative (RH30) strong similarity to ethylene-responsive RNA helicase [Lycopersicon esculentum] GI:5669638; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 484 Score = 123 bits (296), Expect = 1e-28 Identities = 61/85 (71%), Positives = 68/85 (80%) Frame = +3 Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434 GPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPG Sbjct: 238 GPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 297 Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509 RLID LE TNL+R TYLVLDEAD Sbjct: 298 RLIDMLECQHTNLKRVTYLVLDEAD 322 Score = 79.0 bits (186), Expect = 3e-15 Identities = 34/43 (79%), Positives = 38/43 (88%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 RMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA L Sbjct: 323 RMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFL 365 Score = 75.4 bits (177), Expect = 3e-14 Identities = 27/58 (46%), Positives = 46/58 (79%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 ++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+G+A+ Sbjct: 153 ISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210 Score = 41.9 bits (94), Expect = 4e-04 Identities = 16/23 (69%), Positives = 22/23 (95%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHINNQP 237 ++TGSGKTLAY+LPA+VH++ QP Sbjct: 209 AETGSGKTLAYLLPALVHVSAQP 231 >At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 619 Score = 111 bits (266), Expect = 5e-25 Identities = 55/96 (57%), Positives = 67/96 (69%) Frame = +3 Query: 222 HKQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 401 H Q R GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLE Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278 Query: 402 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509 RG +IV+ATPGRL D LE +L++ +YLVLDEAD Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314 Score = 67.7 bits (158), Expect = 6e-12 Identities = 30/43 (69%), Positives = 37/43 (86%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 RMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A LL Sbjct: 315 RMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLL 357 Score = 64.9 bits (151), Expect = 5e-11 Identities = 28/58 (48%), Positives = 39/58 (67%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 +TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V +AK Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203 Score = 30.7 bits (66), Expect = 0.91 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHI 225 ++TGSGKTL Y++P +H+ Sbjct: 202 AKTGSGKTLGYLIPGFLHL 220 >At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 619 Score = 111 bits (266), Expect = 5e-25 Identities = 55/96 (57%), Positives = 67/96 (69%) Frame = +3 Query: 222 HKQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 401 H Q R GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLE Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278 Query: 402 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509 RG +IV+ATPGRL D LE +L++ +YLVLDEAD Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314 Score = 67.7 bits (158), Expect = 6e-12 Identities = 30/43 (69%), Positives = 37/43 (86%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 RMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A LL Sbjct: 315 RMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLL 357 Score = 64.9 bits (151), Expect = 5e-11 Identities = 28/58 (48%), Positives = 39/58 (67%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 +TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V +AK Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203 Score = 30.7 bits (66), Expect = 0.91 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHI 225 ++TGSGKTL Y++P +H+ Sbjct: 202 AKTGSGKTLGYLIPGFLHL 220 >At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 618 Score = 111 bits (266), Expect = 5e-25 Identities = 55/96 (57%), Positives = 67/96 (69%) Frame = +3 Query: 222 HKQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 401 H Q R GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLE Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278 Query: 402 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509 RG +IV+ATPGRL D LE +L++ +YLVLDEAD Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314 Score = 67.7 bits (158), Expect = 6e-12 Identities = 30/43 (69%), Positives = 37/43 (86%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 RMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A LL Sbjct: 315 RMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLL 357 Score = 64.9 bits (151), Expect = 5e-11 Identities = 28/58 (48%), Positives = 39/58 (67%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 +TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V +AK Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203 Score = 30.7 bits (66), Expect = 0.91 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHI 225 ++TGSGKTL Y++P +H+ Sbjct: 202 AKTGSGKTLGYLIPGFLHL 220 >At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain Length = 713 Score = 103 bits (248), Expect = 8e-23 Identities = 52/96 (54%), Positives = 65/96 (67%) Frame = +3 Query: 222 HKQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 401 H Q R GP LVL+PTRELA QIQ A FG +S + C++GGAPK Q +++E Sbjct: 290 HLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIE 349 Query: 402 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509 RGV+IV+ATPGRL D LE +L + +YLVLDEAD Sbjct: 350 RGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEAD 385 Score = 69.7 bits (163), Expect = 2e-12 Identities = 30/43 (69%), Positives = 37/43 (86%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 RMLDMGFEPQIRKI+ ++ RQTLM++ATWPKEV+K+A LL Sbjct: 386 RMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLL 428 Score = 42.3 bits (95), Expect = 3e-04 Identities = 16/31 (51%), Positives = 23/31 (74%) Frame = +2 Query: 83 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 V + G+ P+PIQAQ WPIAM +++V +AK Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274 Score = 30.7 bits (66), Expect = 0.91 Identities = 10/19 (52%), Positives = 16/19 (84%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHI 225 ++TGSGKTL Y++P +H+ Sbjct: 273 AKTGSGKTLGYLIPGFMHL 291 >At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00397: WW domain Length = 1088 Score = 102 bits (245), Expect = 2e-22 Identities = 50/87 (57%), Positives = 62/87 (71%) Frame = +3 Query: 249 R*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 428 R GP L+LAPTRELA QIQ A FG +S + TC++GGAPK Q ++LERG +IV+AT Sbjct: 505 RNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVAT 564 Query: 429 PGRLIDFLEKGTTNLQRCTYLVLDEAD 509 PGRL D LE + Q+ + LVLDEAD Sbjct: 565 PGRLNDILEMKMIDFQQVSLLVLDEAD 591 Score = 73.3 bits (172), Expect = 1e-13 Identities = 32/43 (74%), Positives = 38/43 (88%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 RMLDMGFEPQIRKI+ +I P RQTLM++ATWPKEV+K+A LL Sbjct: 592 RMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLL 634 Score = 52.8 bits (121), Expect = 2e-07 Identities = 22/58 (37%), Positives = 35/58 (60%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 VT +G + P FE + P + + + + G+ PTPIQAQ WPIA+ +++V +AK Sbjct: 423 VTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAK 480 Score = 29.1 bits (62), Expect = 2.8 Identities = 10/17 (58%), Positives = 15/17 (88%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIV 219 ++TGSGKTL Y++PA + Sbjct: 479 AKTGSGKTLGYLIPAFI 495 >At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 646 Score = 93.1 bits (221), Expect = 2e-19 Identities = 43/84 (51%), Positives = 59/84 (70%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437 P+A++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV+I++ATPGR Sbjct: 225 PLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGR 284 Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509 L D LE+G +LQ +L LDEAD Sbjct: 285 LNDLLERGRVSLQMVRFLALDEAD 308 Score = 58.8 bits (136), Expect = 3e-09 Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 4/79 (5%) Frame = +2 Query: 437 IN*FLGKGHNQLTAVHIFSS**G*RMLDMGFEPQIRKIIEQI-RPD---RQTLMWSATWP 604 +N L +G L V + RMLDMGFEPQIRKI++Q+ P RQT+++SAT+P Sbjct: 285 LNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 344 Query: 605 KEVKKLAEGLLGETTFRSI 661 +E+++LA L F ++ Sbjct: 345 REIQRLASDFLSNYIFLAV 363 Score = 36.7 bits (81), Expect = 0.014 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 + SG V P+ F E + + + ++ Y +PTP+Q PI +G++L+ A+ Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQ 191 >At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28 {Saccharomyces cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 733 Score = 92.3 bits (219), Expect = 3e-19 Identities = 47/89 (52%), Positives = 58/89 (65%) Frame = +3 Query: 243 SER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 422 +E GP A+V+APTRELAQQI++ F H R T + GG EQ + +G EIVI Sbjct: 385 NETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVI 444 Query: 423 ATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509 ATPGRLID LE+ L +C Y+VLDEAD Sbjct: 445 ATPGRLIDCLERRYAVLNQCNYVVLDEAD 473 Score = 42.3 bits (95), Expect = 3e-04 Identities = 15/58 (25%), Positives = 35/58 (60%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++G+A+ Sbjct: 301 ISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAE 358 Score = 34.3 bits (75), Expect = 0.074 Identities = 12/25 (48%), Positives = 20/25 (80%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHINNQPPI 243 ++TGSGKT A++LP + +I+ PP+ Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPM 381 Score = 30.7 bits (66), Expect = 0.91 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 17/60 (28%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIE-----QIRPD------------RQTLMWSATWPKEVKKLAEGLL 637 RM+DMGFEPQ+ +++ ++P+ R T M+SAT P V++LA L Sbjct: 474 RMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYL 533 >At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo sapiens] GI:3523150; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 633 Score = 90.6 bits (215), Expect = 8e-19 Identities = 41/84 (48%), Positives = 58/84 (69%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437 P+A++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV+I++ATPGR Sbjct: 238 PLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGR 297 Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509 L D LE+ ++Q +L LDEAD Sbjct: 298 LNDLLERARVSMQMIRFLALDEAD 321 Score = 60.5 bits (140), Expect = 1e-09 Identities = 30/55 (54%), Positives = 41/55 (74%), Gaps = 4/55 (7%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEGLLGETTFRSI 661 RMLDMGFEPQIRKI+EQ+ R RQTL++SAT+P+E+++LA L F ++ Sbjct: 322 RMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAV 376 Score = 37.9 bits (84), Expect = 0.006 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 + SG V P+ F E + + + ++ Y +PTP+Q PI + G++L+ A+ Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQ 204 >At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 760 Score = 89.0 bits (211), Expect = 2e-18 Identities = 44/85 (51%), Positives = 56/85 (65%) Frame = +3 Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434 GPI ++ APTRELA QI A F +R + V+GG K EQ ++L+ G EIV+ATPG Sbjct: 301 GPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPG 360 Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509 RLID L+ + R +YLVLDEAD Sbjct: 361 RLIDMLKMKALTMMRASYLVLDEAD 385 Score = 64.5 bits (150), Expect = 6e-11 Identities = 28/45 (62%), Positives = 37/45 (82%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643 RM D+GFEPQ+R I+ QIRPDRQTL++SAT P +V+KLA +L + Sbjct: 386 RMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSD 430 Score = 62.5 bits (145), Expect = 2e-10 Identities = 23/58 (39%), Positives = 38/58 (65%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 + VSG +VH P++ FE+ F + +K Y++PT IQ Q PI +SG++++G+AK Sbjct: 216 IRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAK 273 Score = 41.9 bits (94), Expect = 4e-04 Identities = 17/29 (58%), Positives = 24/29 (82%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGE 255 ++TGSGKT A++LP IVHI +QP ++R E Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDE 300 >At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 86.6 bits (205), Expect = 1e-17 Identities = 40/84 (47%), Positives = 56/84 (66%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437 P A++L+PTRELA QI A F + + V+ +GG P +Q R+LERG +I++ATPGR Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289 Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509 L D LE+ ++Q +L LDEAD Sbjct: 290 LNDLLERARVSMQMIRFLALDEAD 313 Score = 56.8 bits (131), Expect = 1e-08 Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 4/55 (7%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEGLLGETTFRSI 661 RMLDMGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA + F ++ Sbjct: 314 RMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAV 368 Score = 36.3 bits (80), Expect = 0.018 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ A+ Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQ 196 >At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) similar to RNA helicase DBY protein [Mus musculus] GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like protein 2) {Homo sapiens}; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH11 GI:3775998 Length = 612 Score = 86.6 bits (205), Expect = 1e-17 Identities = 40/84 (47%), Positives = 56/84 (66%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437 P A++L+PTRELA QI A F + + V+ +GG P +Q R+LERG +I++ATPGR Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289 Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509 L D LE+ ++Q +L LDEAD Sbjct: 290 LNDLLERARVSMQMIRFLALDEAD 313 Score = 56.8 bits (131), Expect = 1e-08 Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 4/55 (7%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEGLLGETTFRSI 661 RMLDMGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA + F ++ Sbjct: 314 RMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAV 368 Score = 36.3 bits (80), Expect = 0.018 Identities = 16/58 (27%), Positives = 30/58 (51%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ A+ Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQ 196 >At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to RNA helicase [Rattus norvegicus] GI:897915; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 1166 Score = 84.2 bits (199), Expect = 7e-17 Identities = 45/88 (51%), Positives = 57/88 (64%), Gaps = 3/88 (3%) Frame = +3 Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434 GPI LV+APTREL QQI F +R V+GG+ +Q +L+RG EIV+ TPG Sbjct: 602 GPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPG 661 Query: 435 RLIDFL--EKG-TTNLQRCTYLVLDEAD 509 R+ID L G TNL+R T+LV+DEAD Sbjct: 662 RMIDILCTSSGKITNLRRVTFLVMDEAD 689 Score = 61.7 bits (143), Expect = 4e-10 Identities = 26/45 (57%), Positives = 38/45 (84%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643 RM DMGFEPQI +II+ IRP+RQT+++SAT+P++V+ LA +L + Sbjct: 690 RMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNK 734 Score = 50.4 bits (115), Expect = 1e-06 Identities = 21/56 (37%), Positives = 34/56 (60%) Frame = +2 Query: 8 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 V G +V PI+++ + + +K + Y++P PIQ Q PI MSG++ +GVAK Sbjct: 519 VHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAK 574 Score = 41.9 bits (94), Expect = 4e-04 Identities = 15/29 (51%), Positives = 23/29 (79%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGE 255 ++TGSGKTL ++LP + HI +QPP+ G+ Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGD 601 >At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar to RNA helicase GB:A57514 GI:897915 from [Rattus norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 989 Score = 82.6 bits (195), Expect = 2e-16 Identities = 45/88 (51%), Positives = 56/88 (63%), Gaps = 3/88 (3%) Frame = +3 Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434 GPI LV+APTREL QQI F + V+GG+ +Q +L+RG EIV+ TPG Sbjct: 469 GPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPG 528 Query: 435 RLIDFL--EKG-TTNLQRCTYLVLDEAD 509 R+ID L G TNL+R TYLV+DEAD Sbjct: 529 RMIDILCTSSGKITNLRRVTYLVMDEAD 556 Score = 62.9 bits (146), Expect = 2e-10 Identities = 26/45 (57%), Positives = 38/45 (84%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643 RM DMGFEPQI +I++ IRPDRQT+++SAT+P++V+ LA +L + Sbjct: 557 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNK 601 Score = 53.6 bits (123), Expect = 1e-07 Identities = 23/56 (41%), Positives = 35/56 (62%) Frame = +2 Query: 8 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 V G +V PIQ++ + + +K + Y++P PIQAQ PI MSG++ +GVAK Sbjct: 386 VHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAK 441 Score = 41.9 bits (94), Expect = 4e-04 Identities = 15/29 (51%), Positives = 23/29 (79%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGE 255 ++TGSGKTL ++LP + HI +QPP+ G+ Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGD 468 >At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to RNA helicases GI:3775995, GI:3775987 from [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 616 Score = 81.8 bits (193), Expect = 4e-16 Identities = 38/85 (44%), Positives = 60/85 (70%), Gaps = 1/85 (1%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVIATPG 434 P+ LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R L+ GV++ + TPG Sbjct: 179 PLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPG 235 Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509 R+ID +++G NL ++VLDEAD Sbjct: 236 RVIDLMKRGALNLSEVQFVVLDEAD 260 Score = 35.1 bits (77), Expect = 0.042 Identities = 15/43 (34%), Positives = 27/43 (62%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 +ML +GF + I+E++ RQ++M+SAT P ++ L + L Sbjct: 261 QMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYL 303 >At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar to p68 RNA helicase [Schizosaccharomyces pombe] GI:173419 Length = 537 Score = 81.4 bits (192), Expect = 5e-16 Identities = 40/89 (44%), Positives = 55/89 (61%) Frame = +3 Query: 243 SER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 422 S++ P LVL+PTRELA QI V + G +++ CV+GG+ K Q + GV+IVI Sbjct: 187 SKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVI 246 Query: 423 ATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509 TPGRL D +E L +++VLDEAD Sbjct: 247 GTPGRLRDLIESNVLRLSDVSFVVLDEAD 275 Score = 50.0 bits (114), Expect = 1e-06 Identities = 23/52 (44%), Positives = 32/52 (61%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGETTFRSIL 664 RMLDMGFE +R I+ RQ +M+SATWP +V KLA+ + + I+ Sbjct: 276 RMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVII 327 Score = 46.8 bits (106), Expect = 1e-05 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%) Frame = +2 Query: 2 VTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP + G++L+G+AK Sbjct: 102 VTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAK 159 Score = 31.9 bits (69), Expect = 0.39 Identities = 12/19 (63%), Positives = 18/19 (94%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHI 225 ++TGSGKTLA+ +PAI+H+ Sbjct: 158 AKTGSGKTLAFGIPAIMHV 176 >At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) similar to RNA helicases GI:3775995, GI:3775987 [Arabidopsis thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 610 Score = 79.8 bits (188), Expect = 2e-15 Identities = 37/85 (43%), Positives = 59/85 (69%), Gaps = 1/85 (1%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVIATPG 434 P LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L G+++ + TPG Sbjct: 191 PQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPG 247 Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509 R+ID +++G NL ++VLDEAD Sbjct: 248 RIIDLMKRGALNLSEVQFVVLDEAD 272 Score = 33.9 bits (74), Expect = 0.098 Identities = 14/43 (32%), Positives = 27/43 (62%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 +ML +GF + I++++ RQ++M+SAT P ++ L + L Sbjct: 273 QMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYL 315 Score = 27.5 bits (58), Expect = 8.5 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = +1 Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 216 K G+++ + L + ++ R++TG+GKTLA+ +P I Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175 >At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly identical to RNA helicase [Arabidopsis thaliana] GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF00098: Zinc knuckle Length = 747 Score = 76.6 bits (180), Expect = 1e-14 Identities = 39/84 (46%), Positives = 52/84 (61%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437 P LVLAPTRELA+Q+++ + Y+ CV+GG Q L RGV++V+ TPGR Sbjct: 181 PKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR 238 Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509 +ID +E + L YLVLDEAD Sbjct: 239 IIDLIEGRSLKLGEVEYLVLDEAD 262 Score = 40.3 bits (90), Expect = 0.001 Identities = 19/43 (44%), Positives = 28/43 (65%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 +ML +GFE + I+E + RQ++++SAT P VKKLA L Sbjct: 263 QMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYL 305 >At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative Length = 591 Score = 74.9 bits (176), Expect = 4e-14 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 6/91 (6%) Frame = +3 Query: 255 GPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEI 416 GPI L++ P+RELA+Q ++Q A Y +R+ GG R Q ++RGV I Sbjct: 222 GPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHI 281 Query: 417 VIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509 V+ATPGRL D L K +L C YL LDEAD Sbjct: 282 VVATPGRLKDMLAKKKMSLDACRYLTLDEAD 312 Score = 53.2 bits (122), Expect = 1e-07 Identities = 21/57 (36%), Positives = 38/57 (66%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 172 + V+G ++ PI+ F++ FP V +K G +PTPIQ QG P+ ++G++++G+A Sbjct: 134 IIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIA 190 Score = 43.2 bits (97), Expect = 2e-04 Identities = 17/43 (39%), Positives = 29/43 (67%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 R++D+GFE IR++ + + RQTL++SAT P +++ A L Sbjct: 313 RLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSAL 355 >At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 505 Score = 74.1 bits (174), Expect = 7e-14 Identities = 37/88 (42%), Positives = 50/88 (56%) Frame = +3 Query: 246 ER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 425 +R P+A+VLAPTREL Q++ A G + V GG P Q +++GVE++I Sbjct: 183 QRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIG 242 Query: 426 TPGRLIDFLEKGTTNLQRCTYLVLDEAD 509 TPGR++D L K T L VLDE D Sbjct: 243 TPGRVVDLLSKHTIELDNIMTFVLDEVD 270 Score = 40.7 bits (91), Expect = 9e-04 Identities = 20/53 (37%), Positives = 28/53 (52%) Frame = +2 Query: 14 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 172 G V P+ F P + ++T GY PTPIQ Q P A++GK+L+ A Sbjct: 102 GSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASA 154 >At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 368 Score = 74.1 bits (174), Expect = 7e-14 Identities = 37/88 (42%), Positives = 50/88 (56%) Frame = +3 Query: 246 ER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 425 +R P+A+VLAPTREL Q++ A G + V GG P Q +++GVE++I Sbjct: 46 QRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIG 105 Query: 426 TPGRLIDFLEKGTTNLQRCTYLVLDEAD 509 TPGR++D L K T L VLDE D Sbjct: 106 TPGRVVDLLSKHTIELDNIMTFVLDEVD 133 >At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA helicase DBP2 - Saccharomyces cerevisiae, PID:g5272 Length = 542 Score = 72.5 bits (170), Expect = 2e-13 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 6/91 (6%) Frame = +3 Query: 255 GPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEI 416 GPIALV+ P+RELA+Q ++Q A Y +R+ GG R Q +++GV I Sbjct: 173 GPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHI 232 Query: 417 VIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509 V+ATPGRL D L K +L C L LDEAD Sbjct: 233 VVATPGRLKDILAKKKMSLDACRLLTLDEAD 263 Score = 55.6 bits (128), Expect = 3e-08 Identities = 22/57 (38%), Positives = 38/57 (66%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 172 +TV+G ++ PI+ F + FP + + +K G PTPIQ QG P+ +SG++++G+A Sbjct: 85 ITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIA 141 Score = 41.9 bits (94), Expect = 4e-04 Identities = 17/43 (39%), Positives = 28/43 (65%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 R++D+GFE IR + + + RQTL++SAT P +++ A L Sbjct: 264 RLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSAL 306 Score = 27.5 bits (58), Expect = 8.5 Identities = 10/15 (66%), Positives = 13/15 (86%) Frame = +1 Query: 175 TGSGKTLAYILPAIV 219 TGSGKTL ++LP I+ Sbjct: 143 TGSGKTLVFVLPMII 157 >At3g13920.1 68416.m01758 eukaryotic translation initiation factor 4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485; contains Pfam profile PF00270: DEAD/DEAH box helicase; contains Pfam profile PF00271: Helicase conserved C-terminal domain Length = 412 Score = 72.1 bits (169), Expect = 3e-13 Identities = 38/82 (46%), Positives = 48/82 (58%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443 ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+ Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169 Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509 D L++ + VLDEAD Sbjct: 170 DMLKRQSLRADNIKMFVLDEAD 191 Score = 28.7 bits (61), Expect = 3.7 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643 ML GF+ QI I + + P Q ++SAT P E ++ + + Sbjct: 193 MLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSK 236 >At1g72730.1 68414.m08410 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative similar to Eukaryotic initiation factor 4A-10 GB:P41382 [Nicotiana tabacum]; identical to (putative) RNA helicase GB:CAA09211 [Arabidopsis thaliana] (Nucleic Acids Res. 27 (2), 628-636 (1999)) Length = 414 Score = 72.1 bits (169), Expect = 3e-13 Identities = 38/82 (46%), Positives = 47/82 (57%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443 ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+ Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVF 171 Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509 D L + + VLDEAD Sbjct: 172 DLLRRQSLRADAIKMFVLDEAD 193 >At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA helicase -Mus musculus,PIR2:I84741 Length = 621 Score = 71.7 bits (168), Expect = 4e-13 Identities = 34/84 (40%), Positives = 50/84 (59%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437 P +VL PTREL++Q+ +VA H + R+ V GG+ R Q L +++V+ TPGR Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGR 249 Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509 ++ +E+G YLVLDEAD Sbjct: 250 ILQHIEEGNMVYGDIAYLVLDEAD 273 Score = 30.3 bits (65), Expect = 1.2 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +1 Query: 169 SQTGSGKTLAYILPAI 216 S TGSGKTLAY+LP + Sbjct: 156 SHTGSGKTLAYLLPIV 171 >At1g54270.1 68414.m06187 eukaryotic translation initiation factor 4A-2 / eIF-4A-2 similar to eukaryotic translation initiation factor 4A GI:19696 from [Nicotiana plumbaginifolia] Length = 412 Score = 70.5 bits (165), Expect = 9e-13 Identities = 38/82 (46%), Positives = 47/82 (57%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443 ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+ Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169 Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509 D L + + VLDEAD Sbjct: 170 DMLRRQSLRPDCIKMFVLDEAD 191 Score = 28.7 bits (61), Expect = 3.7 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643 ML GF+ QI I + + P Q ++SAT P E ++ + + Sbjct: 193 MLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSK 236 >At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly identical to RNA helicase [Arabidopsis thaliana] GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 671 Score = 67.3 bits (157), Expect = 9e-12 Identities = 34/84 (40%), Positives = 50/84 (59%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437 P LVL PTRELA+Q+ +G + + + C++GG Q L+RGV+IV+ TPGR Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGR 234 Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509 + D +E+ + + VLDEAD Sbjct: 235 IKDHIERQNLDFSYLQFRVLDEAD 258 Score = 31.1 bits (67), Expect = 0.69 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +1 Query: 166 RSQTGSGKTLAYILPAIVHINNQP 237 R++TG GKTLA++LP + + N P Sbjct: 139 RARTGQGKTLAFVLPILESLVNGP 162 Score = 28.7 bits (61), Expect = 3.7 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = +2 Query: 512 MLDMGFEPQIRKIIEQIRPDR--QTLMWSATWPKEVKKLAEGLL 637 ML MGF + I+ ++ QTL++SAT P VK ++ L Sbjct: 260 MLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFL 303 >At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 65.3 bits (152), Expect = 3e-11 Identities = 31/82 (37%), Positives = 46/82 (56%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443 A++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++ Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254 Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509 D +KG L+ C LV+DEAD Sbjct: 255 DLTKKGVCVLKDCAMLVMDEAD 276 Score = 34.3 bits (75), Expect = 0.074 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 190 FE+ + +G+ G+++P+PIQ + PIA++G +++ AK K Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174 Score = 33.5 bits (73), Expect = 0.13 Identities = 14/36 (38%), Positives = 25/36 (69%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVK 616 ++L F+P + ++I+ + +RQ LM+SAT+P VK Sbjct: 277 KLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVK 312 >At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12) identical to cDNA DEAD box RNA helicase, RH12 GI:3776000 Length = 498 Score = 65.3 bits (152), Expect = 3e-11 Identities = 31/82 (37%), Positives = 46/82 (56%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443 A++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++ Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254 Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509 D +KG L+ C LV+DEAD Sbjct: 255 DLTKKGVCVLKDCAMLVMDEAD 276 Score = 34.3 bits (75), Expect = 0.074 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 190 FE+ + +G+ G+++P+PIQ + PIA++G +++ AK K Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174 Score = 33.5 bits (73), Expect = 0.13 Identities = 14/36 (38%), Positives = 25/36 (69%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVK 616 ++L F+P + ++I+ + +RQ LM+SAT+P VK Sbjct: 277 KLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVK 312 >At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 64.9 bits (151), Expect = 5e-11 Identities = 30/82 (36%), Positives = 48/82 (58%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443 A+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++ Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261 Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509 D +KG L+ C+ LV+DEAD Sbjct: 262 DLTKKGVCVLKDCSVLVMDEAD 283 Score = 34.7 bits (76), Expect = 0.056 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 190 FE+ + G+ G++ P+PIQ + PIA++G++++ AK K Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181 Score = 33.5 bits (73), Expect = 0.13 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 ++L F+P + +I + RQ LM+SAT+P VK + L Sbjct: 284 KLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFL 326 >At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicases Length = 505 Score = 64.9 bits (151), Expect = 5e-11 Identities = 30/82 (36%), Positives = 48/82 (58%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443 A+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++ Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261 Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509 D +KG L+ C+ LV+DEAD Sbjct: 262 DLTKKGVCVLKDCSVLVMDEAD 283 Score = 34.7 bits (76), Expect = 0.056 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 190 FE+ + G+ G++ P+PIQ + PIA++G++++ AK K Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181 Score = 33.5 bits (73), Expect = 0.13 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 ++L F+P + +I + RQ LM+SAT+P VK + L Sbjct: 284 KLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFL 326 >At1g51380.1 68414.m05780 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative Length = 392 Score = 64.5 bits (150), Expect = 6e-11 Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%) Frame = +3 Query: 267 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443 LVL+P+RELA Q ++ G HT+ + C+ GG E + LERGV V TPGR+ Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGVHAVSGTPGRVY 152 Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509 D +++G+ + LVLDE+D Sbjct: 153 DMIKRGSLQTKAVKLLVLDESD 174 Score = 38.3 bits (85), Expect = 0.005 Identities = 42/199 (21%), Positives = 76/199 (38%) Frame = +2 Query: 32 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAKRWPTSCQ 211 PI+ F++ D V +GV GYK+P+ IQ + + G++++ A+ K TS Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGK---TSMI 76 Query: 212 PLCT*TTNRLFGEVRSDCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVWWCS*KRASP 391 + + + L + +++ + H H C+ S Sbjct: 77 AISVCQIVNISSR-KVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIK 135 Query: 392 GLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHIFSS**G*RMLDMGFEPQIRKIIEQIRPD 571 L G + + +G Q AV + ML G + QI + + D Sbjct: 136 KLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHD 195 Query: 572 RQTLMWSATWPKEVKKLAE 628 Q + SAT P+E+ ++ E Sbjct: 196 IQVCLISATLPQEILEMTE 214 >At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative Length = 528 Score = 63.7 bits (148), Expect = 1e-10 Identities = 31/82 (37%), Positives = 45/82 (54%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443 A++L PTRELA Q QV + + GG R+ L + V +++ TPGR++ Sbjct: 225 AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRIL 284 Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509 D +KG L+ C LV+DEAD Sbjct: 285 DLAKKGVCVLKDCAMLVMDEAD 306 Score = 35.9 bits (79), Expect = 0.024 Identities = 16/43 (37%), Positives = 27/43 (62%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 ++L + F+P I ++I+ + RQ LM+SAT+P VK + L Sbjct: 307 KLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYL 349 Score = 34.3 bits (75), Expect = 0.074 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 190 FE+ + +G+ G+++P+PIQ + PIA++G +++ AK K Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204 >At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar to RNA helicase GI:3776027 from [Arabidopsis thaliana] Length = 513 Score = 63.7 bits (148), Expect = 1e-10 Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%) Frame = +3 Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434 G AL+L+PTR+LA+Q + + G + +R + + GG +Q +L +G +++IATPG Sbjct: 98 GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPG 157 Query: 435 RLIDFL-EKGTTNLQRCTYLVLDEAD 509 RL+ L E L+ Y+V DEAD Sbjct: 158 RLMHLLSEVDDMTLRTVEYVVFDEAD 183 Score = 40.3 bits (90), Expect = 0.001 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 FE N V +K GYK PTPIQ + P+ +SG ++V +A+ Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMAR 73 Score = 37.5 bits (83), Expect = 0.008 Identities = 17/44 (38%), Positives = 28/44 (63%) Frame = +2 Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643 + MGF Q+ +I+ Q+ +RQTL++SAT P + + A+ L E Sbjct: 185 LFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLRE 228 Score = 27.9 bits (59), Expect = 6.4 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGEVRLL 267 ++TGSGKT A+++P + + P +G VR L Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVP--QGGVRAL 102 >At3g19760.1 68416.m02501 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative contains DEAD/DEAH helicase domain; similar to RNA helicase GB:CAA09195 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH2 GI:3775984 Length = 408 Score = 62.1 bits (144), Expect = 3e-10 Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 440 AL+L+PTRELA Q ++ G H + + C+ GG E R LE GV +V TPGR+ Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGVHVVSGTPGRV 164 Query: 441 IDFLEKGTTNLQRCTYLVLDEAD 509 D +++ + + L+LDE+D Sbjct: 165 CDMIKRRSLRTRAIKLLILDESD 187 Score = 33.5 bits (73), Expect = 0.13 Identities = 43/213 (20%), Positives = 82/213 (38%) Frame = +2 Query: 5 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVP 184 T G+E PI F + + V +GV G+++P+ IQ + + G++++ A+ Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83 Query: 185 AKRWPTSCQPLCT*TTNRLFGEVRSDCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVW 364 K + +C + EV++ L + ++T + H H C+ Sbjct: 84 GKTSMIALS-VCQ-VVDTSSREVQA--LILSPTRELATQTEKTIQAIGLHANIQAHACIG 139 Query: 365 WCS*KRASPGLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHIFSS**G*RMLDMGFEPQIR 544 S L G + + + + A+ + ML GF+ QI Sbjct: 140 GNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIY 199 Query: 545 KIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643 + + PD Q + SAT P E+ ++ + E Sbjct: 200 DVYRYLPPDLQVCLVSATLPHEILEMTSKFMTE 232 >At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28) identical to cDNA DEAD box RNA helicase, RH28 GI:3776026 Length = 789 Score = 59.3 bits (137), Expect = 2e-09 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Frame = +3 Query: 267 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 446 L+L PTRELA QI + + + ++ + GG REQ L +IV+ATPGR+ID Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301 Query: 447 FLEKG-TTNLQRCTYLVLDEAD 509 L + +L L+LDEAD Sbjct: 302 HLRNSMSVDLDDLAVLILDEAD 323 Score = 44.0 bits (99), Expect = 9e-05 Identities = 23/56 (41%), Positives = 33/56 (58%) Frame = +2 Query: 5 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 172 TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASA 211 Score = 34.3 bits (75), Expect = 0.074 Identities = 15/40 (37%), Positives = 26/40 (65%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628 R+L GF +I +++ RQT+++SAT +EVK+L + Sbjct: 324 RLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVK 363 >At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains Pfam profiles PF00270:DEAD/DEAH box helicase and PF00271: Helicase conserved C-terminal domain; identical to cDNA RH27 helicase, partial GI:4033334 Length = 633 Score = 58.8 bits (136), Expect = 3e-09 Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 3/93 (3%) Frame = +3 Query: 240 YSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC--VFGGAPKREQARDLERGVE 413 ++ R G LV+ PTRELA Q VA + Y T V GG ++ +A L +GV Sbjct: 221 FTPRNGTGVLVICPTRELAIQSYGVAKEL--LKYHSQTVGKVIGGEKRKTEAEILAKGVN 278 Query: 414 IVIATPGRLIDFLEKGTTNL-QRCTYLVLDEAD 509 +++ATPGRL+D LE + + +LV+DEAD Sbjct: 279 LLVATPGRLLDHLENTNGFIFKNLKFLVMDEAD 311 Score = 34.7 bits (76), Expect = 0.056 Identities = 15/44 (34%), Positives = 25/44 (56%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 FE + D + +K MG+ T IQA+ P M G++++G A+ Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAAR 199 Score = 32.7 bits (71), Expect = 0.23 Identities = 15/39 (38%), Positives = 25/39 (64%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLA 625 R+L+ FE ++KI+ + RQT ++SAT +V+ LA Sbjct: 312 RILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLA 350 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = +1 Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 216 K+ G R + + + ++ ++TGSGKTLA+++PA+ Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213 >At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-consensus acceptor splice site AT at exon 2; similar to DEAD box helicase protein GB:NP_006764 from [Homo sapiens], contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 568 Score = 58.8 bits (136), Expect = 3e-09 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%) Frame = +3 Query: 240 YSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 419 +S R G +V+ PTRELA Q + VA + + V GG +R +A+ + G +V Sbjct: 156 FSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLV 215 Query: 420 IATPGRLIDFLEKGTTNL-QRCTYLVLDEAD 509 IATPGRL+D L+ + + LV+DEAD Sbjct: 216 IATPGRLLDHLQNTKAFIYKHLKCLVIDEAD 246 Score = 33.1 bits (72), Expect = 0.17 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLA 625 R+L+ FE + KI++ + RQT ++SAT +VK LA Sbjct: 247 RILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLA 285 Score = 29.9 bits (64), Expect = 1.6 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +1 Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 216 K+ G Q + + K+ ++TGSGKTLA+++PA+ Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148 Score = 27.5 bits (58), Expect = 8.5 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 F+ + + +K MG++ T IQA + GK+++G A+ Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAAR 134 >At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 781 Score = 58.8 bits (136), Expect = 3e-09 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKREQARDLERGVEIVIATPG 434 P +VL PT ELA Q+ + R+ V GG +R Q +LE+GV+++IATPG Sbjct: 452 PRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPG 511 Query: 435 RLIDFLEKGTTNLQRCTYLVLDEADV 512 R + +G L +LDE D+ Sbjct: 512 RFTYLMNEGILGLSNLRCAILDEVDI 537 Score = 29.5 bits (63), Expect = 2.1 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 172 QTGSGKTLAYILPAIVHINNQ 234 Q+GSGKTLAY++P I + + Sbjct: 419 QSGSGKTLAYLVPVIQRLREE 439 >At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10) probable replication protein A1, Oryza sativa, EMBL:AF009179 Length = 456 Score = 58.0 bits (134), Expect = 5e-09 Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 2/101 (1%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443 A VL+PTRELA QI + G +R + GG + +Q L + +++ATPGRL Sbjct: 92 ACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLW 151 Query: 444 DFLE--KGTTNLQRCTYLVLDEADVCWIWDLNHKSEKSLSK 560 D + KG +L+ YLVLDEAD LN EKSL++ Sbjct: 152 DHMSDTKG-FSLKSLKYLVLDEADRL----LNEDFEKSLNQ 187 Score = 38.3 bits (85), Expect = 0.005 Identities = 15/52 (28%), Positives = 32/52 (61%) Frame = +2 Query: 20 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+A+ Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQ 54 >At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17) identical to GB:CAA09207, contains a DEAD/DEAH box family ATP-dependent helicas signature; identical to cDNA DEAD box RNA helicase, RH17 GI:3776008 Length = 609 Score = 57.6 bits (133), Expect = 7e-09 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%) Frame = +3 Query: 255 GPIALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLERGVEIVIATP 431 G ALV+ PTREL Q+ + H ++ V GG K ++ L +G+ I+IATP Sbjct: 104 GTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATP 163 Query: 432 GRLIDFLEKGTTNLQR-CTYLVLDEAD 509 GRL+D L+ + + + +++ DEAD Sbjct: 164 GRLLDHLKNTASFVHKNLRWVIFDEAD 190 Score = 30.3 bits (65), Expect = 1.2 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +1 Query: 175 TGSGKTLAYILPAIVHINNQPP 240 TG+GKT+AY+ P I H+ P Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSP 97 Score = 29.5 bits (63), Expect = 2.1 Identities = 10/24 (41%), Positives = 19/24 (79%) Frame = +2 Query: 92 MGYKEPTPIQAQGWPIAMSGKNLV 163 MG++ PT +QAQ P+ +SG++++ Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71 >At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13) similar to RNA helicase GB:CAA09204 from [Arabidopsis thaliana]; identical to cDNA DEAD box RNA helicase, RH13 GI:3776002 Length = 832 Score = 57.2 bits (132), Expect = 9e-09 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 3/85 (3%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443 AL++ PTRELA Q+ + + V+ + GG +Q R L+ EIV+ATPGRL Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLW 341 Query: 444 DFL---EKGTTNLQRCTYLVLDEAD 509 + + EK L ++ VLDEAD Sbjct: 342 ELMSAGEKHLVELHSLSFFVLDEAD 366 Score = 27.5 bits (58), Expect = 8.5 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = +1 Query: 139 SYVWKEFSWRSQTGSGKTLAYILPAI 216 +Y K+ ++TGSGKTLA+ LP + Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250 >At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) Length = 593 Score = 52.0 bits (119), Expect = 3e-07 Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%) Frame = +3 Query: 261 IALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 434 + ++++PTREL+ QI VA F T + V + + GG + + +E G ++I TPG Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151 Query: 435 RLIDFLEK-GTTNLQRCTYLVLDEAD 509 RL D +E+ + + L+LDEAD Sbjct: 152 RLSDIMERMEILDFRNLEILILDEAD 177 Score = 35.5 bits (78), Expect = 0.032 Identities = 16/40 (40%), Positives = 29/40 (72%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628 R+L+MGF+ Q+ II ++ R+T ++SAT + V++LA+ Sbjct: 178 RLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAK 217 Score = 27.9 bits (59), Expect = 6.4 Identities = 10/23 (43%), Positives = 18/23 (78%) Frame = +1 Query: 148 WKEFSWRSQTGSGKTLAYILPAI 216 +K+ + + TGSGKTLA+++P + Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLV 75 >At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar to gb|L13612 DEAD-box protein (dbp45A) from Drosophila melanogaster and is a member of PF|00270 DEAD/DEAH box helicase family Length = 491 Score = 50.8 bits (116), Expect = 8e-07 Identities = 34/88 (38%), Positives = 42/88 (47%), Gaps = 3/88 (3%) Frame = +3 Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434 G ALV+ PTRELA Q+ + G +R + + GG Q L IVI TPG Sbjct: 126 GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPG 185 Query: 435 RLIDFLEKG---TTNLQRCTYLVLDEAD 509 R+ LE R +LVLDEAD Sbjct: 186 RIKVLLENNPDVPPVFSRTKFLVLDEAD 213 Score = 37.1 bits (82), Expect = 0.010 Identities = 16/40 (40%), Positives = 27/40 (67%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628 R+LD+GF+ ++R I + + RQTL++SAT ++ L E Sbjct: 214 RVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLE 253 Score = 33.1 bits (72), Expect = 0.17 Identities = 12/44 (27%), Positives = 27/44 (61%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 FE ++ + K +G ++PTP+Q P ++G++++G+A+ Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQ 103 Score = 29.9 bits (64), Expect = 1.6 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = +1 Query: 82 CKDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQP 237 CK+ G+++ + + ++ +QTGSGKT A+ LP + + P Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDP 124 >At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar to ATP-dependent RNA helicase GB:6321111 from (S. cerevisiae) Length = 558 Score = 50.0 bits (114), Expect = 1e-06 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%) Frame = +3 Query: 261 IALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDL-ERGVEIVIATPG 434 + ++++PTREL+ QI +VA F T V + + GG L E G ++I TPG Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151 Query: 435 RLIDFLEK-GTTNLQRCTYLVLDEAD 509 RL D +++ + + L+LDEAD Sbjct: 152 RLSDMMKRMEFLDFRNLEILILDEAD 177 Score = 36.3 bits (80), Expect = 0.018 Identities = 17/40 (42%), Positives = 27/40 (67%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628 R+LDMGF+ Q+ II ++ R+T ++SAT + V LA+ Sbjct: 178 RLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 217 Score = 28.7 bits (61), Expect = 3.7 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%) Frame = +1 Query: 175 TGSGKTLAYILPAIVHI---NNQPP 240 TGSGKTLA++LP I I N+ PP Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP 86 >At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein / pentatricopeptide (PPR) repeat-containing protein contains Pfam profiles: PF00271 helicase conserved C-terminal domain, PF01535 PPR repeat, PF00270: DEAD/DEAH box helicase Length = 1145 Score = 48.8 bits (111), Expect = 3e-06 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Frame = +3 Query: 264 ALVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE-IVIATPGR 437 A+++AP+REL QI ++V G + GGA + Q L++ IV+ TPGR Sbjct: 194 AMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGR 253 Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509 + + + G + C +LVLDE D Sbjct: 254 IAEISKGGKLHTHGCRFLVLDEVD 277 Score = 30.7 bits (66), Expect = 0.91 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = +1 Query: 166 RSQTGSGKTLAYILPAIVHI 225 +S TGSGKTLAY+LP + I Sbjct: 153 QSYTGSGKTLAYLLPILSEI 172 Score = 29.1 bits (62), Expect = 2.8 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 163 FEE PD + ++ G+ PT +Q+ P + G + V Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151 >At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong similarity to RNA helicase RH25 [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH31 GI:3776030 Length = 522 Score = 48.4 bits (110), Expect = 4e-06 Identities = 39/99 (39%), Positives = 48/99 (48%), Gaps = 6/99 (6%) Frame = +3 Query: 231 PTAYSER*GPI-ALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLE 401 PT+ + PI ALV+ PTRELA Q A H S + G EQ R Sbjct: 121 PTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQT 180 Query: 402 RGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEAD 509 +I++ATPGRL D +E T L+ LVLDEAD Sbjct: 181 NPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEAD 219 Score = 41.5 bits (93), Expect = 5e-04 Identities = 17/37 (45%), Positives = 27/37 (72%) Frame = +2 Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 622 +LDMGF I +II + +RQT ++SAT P+EV+++ Sbjct: 221 LLDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQI 257 Score = 32.7 bits (71), Expect = 0.23 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = +1 Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPP 240 KD G + + L K+ +++TG+GKT+A++LP+I + PP Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121 >At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 798 Score = 48.4 bits (110), Expect = 4e-06 Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Frame = +3 Query: 264 ALVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437 AL+L PTRELA QI + A H T + G K +Q R +I+IATPGR Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGR 467 Query: 438 LIDFLEKG---TTNLQRCTYLVLDEADV 512 L+D +E T+ L ++DEAD+ Sbjct: 468 LLDHIENKSGLTSRLMALKLFIVDEADL 495 Score = 42.3 bits (95), Expect = 3e-04 Identities = 18/42 (42%), Positives = 32/42 (76%) Frame = +2 Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 +LD+GF + KII+ + RQ+L++SAT PKEV+++++ +L Sbjct: 496 LLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVL 537 Score = 28.7 bits (61), Expect = 3.7 Identities = 12/42 (28%), Positives = 27/42 (64%) Frame = +1 Query: 91 NGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 216 +G+ + + L++ K+ +++TG+GK++A++LPAI Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387 >At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to RNA helicase RH25 [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 845 Score = 47.6 bits (108), Expect = 7e-06 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Frame = +3 Query: 267 LVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 440 L+L PTRELA QI + A H T + G + +Q R +I+IATPGRL Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515 Query: 441 IDFLEKG---TTNLQRCTYLVLDEADVCWIWDLNHKSE 545 +D +E T+ L ++DEAD+ + DL K + Sbjct: 516 LDHIENKSGLTSRLMALKLFIVDEADL--LLDLGFKRD 551 Score = 42.7 bits (96), Expect = 2e-04 Identities = 18/42 (42%), Positives = 33/42 (78%) Frame = +2 Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637 +LD+GF+ + KII+ + RQ+L++SAT PKEV+++++ +L Sbjct: 543 LLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVL 584 Score = 28.7 bits (61), Expect = 3.7 Identities = 12/42 (28%), Positives = 27/42 (64%) Frame = +1 Query: 91 NGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 216 +G+ + + L++ K+ +++TG+GK++A++LPAI Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434 >At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong similarity to RNA helicase RH26 [Arabidopsis thaliana] GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain; identical to cDNA DEAD box RNA helicase, RH26 GI:3776024 Length = 850 Score = 46.8 bits (106), Expect = 1e-05 Identities = 38/99 (38%), Positives = 46/99 (46%), Gaps = 6/99 (6%) Frame = +3 Query: 231 PTAYSER*GPI-ALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLE 401 P + R PI LV+ PTRELA Q A H S + G EQ R Sbjct: 449 PASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQT 508 Query: 402 RGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEAD 509 +I++ATPGRL D +E + T L LVLDEAD Sbjct: 509 NPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEAD 547 Score = 39.9 bits (89), Expect = 0.001 Identities = 17/37 (45%), Positives = 26/37 (70%) Frame = +2 Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 622 +LDMGF I +II + RQT ++SAT P+EV+++ Sbjct: 549 LLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQI 585 Score = 35.9 bits (79), Expect = 0.024 Identities = 18/55 (32%), Positives = 29/55 (52%) Frame = +1 Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRR 249 KD G + + L K+ +++TG+GKT+A++LPAI + PP R Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASR 452 >At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to RNA helicase [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 563 Score = 44.0 bits (99), Expect = 9e-05 Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 6/99 (6%) Frame = +3 Query: 231 PTAYSER*GPI-ALVLAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER 404 P + R PI LV+ PTRELA Q + + + V GG + R L++ Sbjct: 147 PASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQK 206 Query: 405 G-VEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEAD 509 +I++ATPGRL D ++ + T L LVLDEAD Sbjct: 207 SPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEAD 245 Score = 36.7 bits (81), Expect = 0.014 Identities = 16/37 (43%), Positives = 25/37 (67%) Frame = +2 Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 622 +LDMGF +I +II + RQT ++SAT EV+++ Sbjct: 247 LLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQI 283 Score = 33.1 bits (72), Expect = 0.17 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = +1 Query: 151 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRR 249 K+ +++TG+GKT+A++LP+I + PP R Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASR 150 Score = 27.5 bits (58), Expect = 8.5 Identities = 11/44 (25%), Positives = 23/44 (52%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 F++ +G++ G+K T +Q P+ + GK+++ AK Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAK 125 >At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar to RNA helicase involved in rRNA processing GB:6321267 from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH box domain Length = 541 Score = 42.3 bits (95), Expect = 3e-04 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%) Frame = +2 Query: 2 VTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 169 + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+ Sbjct: 125 IHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFAC 184 Query: 170 AKRVPAKRWPTSCQPL 217 A K + C L Sbjct: 185 APTGSGKTFAFICPML 200 Score = 32.7 bits (71), Expect = 0.23 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437 A++L+P RELA Q + G ++R P + A + +++I+TP R Sbjct: 213 AVILSPARELAAQTAREGKKLIKGSNFHIRLMT----KPLVKTADFSKLWCDVLISTPMR 268 Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509 L ++ +L + YLVLDE+D Sbjct: 269 LKRAIKAKKIDLSKVEYLVLDESD 292 >At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative Length = 739 Score = 41.1 bits (92), Expect = 6e-04 Identities = 22/51 (43%), Positives = 32/51 (62%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGETTFRSI 661 R+LD F+ Q+ II Q+ RQTL++SAT K+VK LA L + + S+ Sbjct: 229 RVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISV 279 Score = 39.1 bits (87), Expect = 0.003 Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%) Frame = +3 Query: 240 YSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 419 +S G ++++PTRELA Q V G + GG + ++ + I+ Sbjct: 138 WSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNIL 197 Query: 420 IATPGRLIDFLEKGTTNLQ--RCTYLVLDEAD 509 + PGRL+ +++ T N + + L+LDEAD Sbjct: 198 VCAPGRLLQHMDE-TPNFECPQLQILILDEAD 228 Score = 28.7 bits (61), Expect = 3.7 Identities = 12/43 (27%), Positives = 27/43 (62%) Frame = +1 Query: 106 TDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQ 234 TD S++ + + ++ ++TGSGKTLA+++P + ++ + Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE 136 >At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar to D-E-A-D box protein [Drosophila melanogaster] GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 512 Score = 40.7 bits (91), Expect = 9e-04 Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 2/43 (4%) Frame = +3 Query: 387 ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEAD 509 +++LE V+I++ATPGRL+D + KG T L+ YLV+DE D Sbjct: 159 SQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETD 200 Score = 29.5 bits (63), Expect = 2.1 Identities = 15/26 (57%), Positives = 18/26 (69%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHINNQPPIR 246 S TGSGKTL+Y LP IV + P+R Sbjct: 69 SPTGSGKTLSYALP-IVQLLASRPVR 93 >At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative Length = 427 Score = 40.3 bits (90), Expect = 0.001 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 431 ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174 Query: 432 GRLIDFLEKGTTNLQRCTYLVLDEAD 509 GR++ + +L+ + +LDE D Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECD 200 >At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15) DEAD BOX RNA helicase RH15, Arabidopsis thaliana, EMBL:ATH010466 Length = 344 Score = 40.3 bits (90), Expect = 0.001 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 431 ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP Sbjct: 34 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 91 Query: 432 GRLIDFLEKGTTNLQRCTYLVLDEAD 509 GR++ + +L+ + +LDE D Sbjct: 92 GRVLALAREKDLSLKNVRHFILDECD 117 >At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15) DEAD BOX RNA helicase RH15, Arabidopsis thaliana, EMBL:ATH010466 Length = 427 Score = 40.3 bits (90), Expect = 0.001 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 431 ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174 Query: 432 GRLIDFLEKGTTNLQRCTYLVLDEAD 509 GR++ + +L+ + +LDE D Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECD 200 >At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA helicase, Mus musculus, PIR:I49731 Length = 496 Score = 37.9 bits (84), Expect = 0.006 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA--RDLERGVEIVIATP 431 P AL + PTRELA Q +V G + + + + A R +VI TP Sbjct: 163 PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTP 222 Query: 432 GRLIDFLEKGTTNLQRCTYLVLDEAD 509 G L ++ L LV DEAD Sbjct: 223 GTLKKWMAFKRLGLNHLKILVFDEAD 248 >At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains Pfam profile: PF00270 DEAD/DEAH box helicase Length = 465 Score = 37.1 bits (82), Expect = 0.010 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = +3 Query: 261 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 440 + ++++PTREL+ QI +VA + + V E E G ++I TPGRL Sbjct: 93 MGVIISPTRELSAQIHKVARAV-RLDFAKCREVEADMNTLE-----EEGANLLIGTPGRL 146 Query: 441 IDFLEK-GTTNLQRCTYLVLDEAD 509 D +++ + + L+LDEAD Sbjct: 147 SDMMKRMEFLDFRNLEILILDEAD 170 Score = 36.3 bits (80), Expect = 0.018 Identities = 17/40 (42%), Positives = 27/40 (67%) Frame = +2 Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628 R+LDMGF+ Q+ II ++ R+T ++SAT + V LA+ Sbjct: 171 RLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 210 Score = 28.7 bits (61), Expect = 3.7 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%) Frame = +1 Query: 175 TGSGKTLAYILPAIVHI---NNQPP 240 TGSGKTLA++LP I I N+ PP Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP 87 >At2g28600.1 68415.m03476 expressed protein Length = 502 Score = 35.1 bits (77), Expect = 0.042 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 434 P L L P++ A Q++ V + + GAP Q L+ E ++ATP Sbjct: 197 PFLLYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGLKSVEPEFIVATPE 255 Query: 435 RLIDFLEKGTTNLQRCTYLVLDE 503 RL++ + ++ + LV+DE Sbjct: 256 RLLEIVTLKGVDISNVSLLVIDE 278 >At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo sapiens, SWISSPROT:IF42_HUMAN Length = 472 Score = 34.7 bits (76), Expect = 0.056 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%) Frame = +3 Query: 264 ALVLAPTRELAQQIQQVAADFGHTSY--VRNTCVF----GGAPKREQARDLERGVEIVIA 425 A+++ PTREL Q+ +VA S V+ V GG +R ++ I++A Sbjct: 147 AVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVA 206 Query: 426 TPGRLIDFLEKGTTNLQRCTYLVLDEAD 509 T L LEK + LV+DE D Sbjct: 207 TVASLCHMLEKHIFRIDSVRVLVVDEVD 234 Score = 27.5 bits (58), Expect = 8.5 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +1 Query: 169 SQTGSGKTLAYILPAIVHINNQ 234 +QTGSGKTL Y+L IN Q Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ 141 >At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16) identical to cDNA DEAD box RNA helicase, RH16 GI:3776006 Length = 626 Score = 31.5 bits (68), Expect = 0.52 Identities = 13/22 (59%), Positives = 18/22 (81%) Frame = +1 Query: 151 KEFSWRSQTGSGKTLAYILPAI 216 K+ R++TGSGKTLAY+LP + Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105 Score = 30.7 bits (66), Expect = 0.91 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 6/91 (6%) Frame = +3 Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV-FGGAPKREQARDLERGV-EIVIATP 431 P A +L P+REL QQ+ + V+ V + R+ G+ EI+++TP Sbjct: 121 PSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTP 180 Query: 432 GRLIDFLEKG----TTNLQRCTYLVLDEADV 512 + G T + + LVLDEAD+ Sbjct: 181 ACIPKCFAAGVLEPTAVSESLSILVLDEADL 211 Score = 28.3 bits (60), Expect = 4.9 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +2 Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175 FEE + + + G ++PT IQ P + GK++V AK Sbjct: 48 FEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAK 91 >At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low similarity to mannosidase [gi:5359712] from Cellulomonas fimi Length = 944 Score = 29.1 bits (62), Expect = 2.8 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Frame = +2 Query: 20 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA----QGWPIAMSGKNLVGVAKRVPA 187 E+ P +F++ + V ++G I+A +GW I + K L G K VP Sbjct: 529 EIQYPEDFFKDTYYKYGFNPEVGSVGMPVAETIRATMPPEGWTIPLFKKGLDGFIKEVPN 588 Query: 188 KRW 196 + W Sbjct: 589 RMW 591 >At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22) similar to RNA helicase GI:3776015 from [Arabidopsis thaliana]; contains Pfam profiles PF00271: Helicase conserved C-terminal domain, PF00270: DEAD/DEAH box helicase; matches EST OAO811-2 Length = 581 Score = 28.3 bits (60), Expect = 4.9 Identities = 14/49 (28%), Positives = 23/49 (46%) Frame = +1 Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINN 231 +D+G R + + K+ ++TGSGKT Y+ P I + N Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144 >At4g21390.1 68417.m03090 S-locus lectin protein kinase family protein contains Pfam profiles: PF00954 S-locus glycoprotein family, PF00069 protein kinase domain, PF01453 lectin (probable mannose binding) Length = 849 Score = 27.9 bits (59), Expect = 6.4 Identities = 19/80 (23%), Positives = 33/80 (41%) Frame = -3 Query: 616 LHFFGPSS*PHQSLSVWAYLLNDFSDLWFKSHIQHTSASSRTKYVHRCKLVVPFSKKSIN 437 L FF P S H+ L +W + D + +W + S S + +V K+I Sbjct: 53 LGFFSPGSSTHRFLGIWYGNIEDKAVVWVANRATPISDQSGVLMISNDGNLVLLDGKNIT 112 Query: 436 LPGVAMTISTPLSKSRACSL 377 + + ST + +R S+ Sbjct: 113 VWSSNIESSTTNNNNRVVSI 132 >At1g11920.1 68414.m01376 pectate lyase family protein similar to pectate lyase GI:14289169 from [Salix gilgiana] Length = 384 Score = 27.5 bits (58), Expect = 8.5 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = +1 Query: 121 SSRLADSYVWKEFSWRSQTGSGKTLAYILPA 213 + R+ Y WK + WR+ K AY +P+ Sbjct: 313 TKRIDSGYDWKRWKWRTSKDVFKNGAYFVPS 343 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,808,619 Number of Sequences: 28952 Number of extensions: 350753 Number of successful extensions: 1190 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 986 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1158 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1403159472 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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