Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0817
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 127 8e-30
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 123 1e-28
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 123 1e-28
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 111 5e-25
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 111 5e-25
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 111 5e-25
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 103 8e-23
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 102 2e-22
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 93 2e-19
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 92 3e-19
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 91 8e-19
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 89 2e-18
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 87 1e-17
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 87 1e-17
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 84 7e-17
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 83 2e-16
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 82 4e-16
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 81 5e-16
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 80 2e-15
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 77 1e-14
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 75 4e-14
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 74 7e-14
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 74 7e-14
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 73 2e-13
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 72 3e-13
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 72 3e-13
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 72 4e-13
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 71 9e-13
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 67 9e-12
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 65 3e-11
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 65 3e-11
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 65 5e-11
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 65 5e-11
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 64 6e-11
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 64 1e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 64 1e-10
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 62 3e-10
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 59 2e-09
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 59 3e-09
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 59 3e-09
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 59 3e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 58 5e-09
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 58 7e-09
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 57 9e-09
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 52 3e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 51 8e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 50 1e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 49 3e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 48 4e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 4e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 48 7e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 47 1e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 44 9e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 42 3e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 6e-04
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 41 9e-04
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 40 0.001
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 40 0.001
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 40 0.001
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 38 0.006
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 37 0.010
At2g28600.1 68415.m03476 expressed protein 35 0.042
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 35 0.056
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 31 0.52
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo... 29 2.8
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 4.9
At4g21390.1 68417.m03090 S-locus lectin protein kinase family pr... 28 6.4
At1g11920.1 68414.m01376 pectate lyase family protein similar to... 27 8.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 127 bits (306), Expect = 8e-30
Identities = 59/85 (69%), Positives = 69/85 (81%)
Frame = +3
Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
GPI LVLAPTRELA QIQQ A+ FG +S ++ TC++GG PK Q RDL++GVEIVIATPG
Sbjct: 172 GPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPG 231
Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509
RLID +E TNL+R TYLVLDEAD
Sbjct: 232 RLIDMMESNNTNLRRVTYLVLDEAD 256
Score = 77.4 bits (182), Expect = 8e-15
Identities = 29/58 (50%), Positives = 44/58 (75%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
+TV G ++ P++ F + FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+
Sbjct: 87 ITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAE 144
Score = 75.8 bits (178), Expect = 2e-14
Identities = 32/43 (74%), Positives = 38/43 (88%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
RMLDMGF+PQIRKI+ IRPDRQTL WSATWPKEV++L++ L
Sbjct: 257 RMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFL 299
Score = 46.4 bits (105), Expect = 2e-05
Identities = 18/29 (62%), Positives = 25/29 (86%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGE 255
++TGSGKTL+Y+LPAIVH+N QP + G+
Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHGD 171
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 123 bits (296), Expect = 1e-28
Identities = 61/85 (71%), Positives = 68/85 (80%)
Frame = +3
Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
GPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPG
Sbjct: 238 GPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 297
Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509
RLID LE TNL+R TYLVLDEAD
Sbjct: 298 RLIDMLECQHTNLKRVTYLVLDEAD 322
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
RMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA L
Sbjct: 323 RMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFL 365
Score = 75.4 bits (177), Expect = 3e-14
Identities = 27/58 (46%), Positives = 46/58 (79%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+G+A+
Sbjct: 153 ISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/23 (69%), Positives = 22/23 (95%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHINNQP 237
++TGSGKTLAY+LPA+VH++ QP
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQP 231
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 123 bits (296), Expect = 1e-28
Identities = 61/85 (71%), Positives = 68/85 (80%)
Frame = +3
Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
GPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPG
Sbjct: 238 GPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPG 297
Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509
RLID LE TNL+R TYLVLDEAD
Sbjct: 298 RLIDMLECQHTNLKRVTYLVLDEAD 322
Score = 79.0 bits (186), Expect = 3e-15
Identities = 34/43 (79%), Positives = 38/43 (88%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
RMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+EV+ LA L
Sbjct: 323 RMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFL 365
Score = 75.4 bits (177), Expect = 3e-14
Identities = 27/58 (46%), Positives = 46/58 (79%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
++V G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+G+A+
Sbjct: 153 ISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210
Score = 41.9 bits (94), Expect = 4e-04
Identities = 16/23 (69%), Positives = 22/23 (95%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHINNQP 237
++TGSGKTLAY+LPA+VH++ QP
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQP 231
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 111 bits (266), Expect = 5e-25
Identities = 55/96 (57%), Positives = 67/96 (69%)
Frame = +3
Query: 222 HKQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 401
H Q R GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 402 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
RG +IV+ATPGRL D LE +L++ +YLVLDEAD
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
RMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A LL
Sbjct: 315 RMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLL 357
Score = 64.9 bits (151), Expect = 5e-11
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V +AK
Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Score = 30.7 bits (66), Expect = 0.91
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHI 225
++TGSGKTL Y++P +H+
Sbjct: 202 AKTGSGKTLGYLIPGFLHL 220
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 111 bits (266), Expect = 5e-25
Identities = 55/96 (57%), Positives = 67/96 (69%)
Frame = +3
Query: 222 HKQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 401
H Q R GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 402 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
RG +IV+ATPGRL D LE +L++ +YLVLDEAD
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
RMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A LL
Sbjct: 315 RMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLL 357
Score = 64.9 bits (151), Expect = 5e-11
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V +AK
Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Score = 30.7 bits (66), Expect = 0.91
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHI 225
++TGSGKTL Y++P +H+
Sbjct: 202 AKTGSGKTLGYLIPGFLHL 220
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 111 bits (266), Expect = 5e-25
Identities = 55/96 (57%), Positives = 67/96 (69%)
Frame = +3
Query: 222 HKQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 401
H Q R GP LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLE
Sbjct: 219 HLQRIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLE 278
Query: 402 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
RG +IV+ATPGRL D LE +L++ +YLVLDEAD
Sbjct: 279 RGADIVVATPGRLNDILEMRRISLRQISYLVLDEAD 314
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
RMLDMGFEPQIRKI+++I RQTLM++ATWPK V+K+A LL
Sbjct: 315 RMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLL 357
Score = 64.9 bits (151), Expect = 5e-11
Identities = 28/58 (48%), Positives = 39/58 (67%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
+TVSG +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V +AK
Sbjct: 146 ITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Score = 30.7 bits (66), Expect = 0.91
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHI 225
++TGSGKTL Y++P +H+
Sbjct: 202 AKTGSGKTLGYLIPGFLHL 220
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 103 bits (248), Expect = 8e-23
Identities = 52/96 (54%), Positives = 65/96 (67%)
Frame = +3
Query: 222 HKQPTAYSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 401
H Q R GP LVL+PTRELA QIQ A FG +S + C++GGAPK Q +++E
Sbjct: 290 HLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIE 349
Query: 402 RGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
RGV+IV+ATPGRL D LE +L + +YLVLDEAD
Sbjct: 350 RGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEAD 385
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/43 (69%), Positives = 37/43 (86%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
RMLDMGFEPQIRKI+ ++ RQTLM++ATWPKEV+K+A LL
Sbjct: 386 RMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLL 428
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +2
Query: 83 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
V + G+ P+PIQAQ WPIAM +++V +AK
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274
Score = 30.7 bits (66), Expect = 0.91
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHI 225
++TGSGKTL Y++P +H+
Sbjct: 273 AKTGSGKTLGYLIPGFMHL 291
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 102 bits (245), Expect = 2e-22
Identities = 50/87 (57%), Positives = 62/87 (71%)
Frame = +3
Query: 249 R*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 428
R GP L+LAPTRELA QIQ A FG +S + TC++GGAPK Q ++LERG +IV+AT
Sbjct: 505 RNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVAT 564
Query: 429 PGRLIDFLEKGTTNLQRCTYLVLDEAD 509
PGRL D LE + Q+ + LVLDEAD
Sbjct: 565 PGRLNDILEMKMIDFQQVSLLVLDEAD 591
Score = 73.3 bits (172), Expect = 1e-13
Identities = 32/43 (74%), Positives = 38/43 (88%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
RMLDMGFEPQIRKI+ +I P RQTLM++ATWPKEV+K+A LL
Sbjct: 592 RMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLL 634
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/58 (37%), Positives = 35/58 (60%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
VT +G + P FE + P + + + + G+ PTPIQAQ WPIA+ +++V +AK
Sbjct: 423 VTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAK 480
Score = 29.1 bits (62), Expect = 2.8
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIV 219
++TGSGKTL Y++PA +
Sbjct: 479 AKTGSGKTLGYLIPAFI 495
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 93.1 bits (221), Expect = 2e-19
Identities = 43/84 (51%), Positives = 59/84 (70%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
P+A++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV+I++ATPGR
Sbjct: 225 PLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGR 284
Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
L D LE+G +LQ +L LDEAD
Sbjct: 285 LNDLLERGRVSLQMVRFLALDEAD 308
Score = 58.8 bits (136), Expect = 3e-09
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Frame = +2
Query: 437 IN*FLGKGHNQLTAVHIFSS**G*RMLDMGFEPQIRKIIEQI-RPD---RQTLMWSATWP 604
+N L +G L V + RMLDMGFEPQIRKI++Q+ P RQT+++SAT+P
Sbjct: 285 LNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 344
Query: 605 KEVKKLAEGLLGETTFRSI 661
+E+++LA L F ++
Sbjct: 345 REIQRLASDFLSNYIFLAV 363
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
+ SG V P+ F E + + + ++ Y +PTP+Q PI +G++L+ A+
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQ 191
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 92.3 bits (219), Expect = 3e-19
Identities = 47/89 (52%), Positives = 58/89 (65%)
Frame = +3
Query: 243 SER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 422
+E GP A+V+APTRELAQQI++ F H R T + GG EQ + +G EIVI
Sbjct: 385 NETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVI 444
Query: 423 ATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
ATPGRLID LE+ L +C Y+VLDEAD
Sbjct: 445 ATPGRLIDCLERRYAVLNQCNYVVLDEAD 473
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/58 (25%), Positives = 35/58 (60%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++G+A+
Sbjct: 301 ISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAE 358
Score = 34.3 bits (75), Expect = 0.074
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHINNQPPI 243
++TGSGKT A++LP + +I+ PP+
Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPM 381
Score = 30.7 bits (66), Expect = 0.91
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 17/60 (28%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIE-----QIRPD------------RQTLMWSATWPKEVKKLAEGLL 637
RM+DMGFEPQ+ +++ ++P+ R T M+SAT P V++LA L
Sbjct: 474 RMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYL 533
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 90.6 bits (215), Expect = 8e-19
Identities = 41/84 (48%), Positives = 58/84 (69%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
P+A++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV+I++ATPGR
Sbjct: 238 PLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGR 297
Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
L D LE+ ++Q +L LDEAD
Sbjct: 298 LNDLLERARVSMQMIRFLALDEAD 321
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/55 (54%), Positives = 41/55 (74%), Gaps = 4/55 (7%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEGLLGETTFRSI 661
RMLDMGFEPQIRKI+EQ+ R RQTL++SAT+P+E+++LA L F ++
Sbjct: 322 RMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAV 376
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
+ SG V P+ F E + + + ++ Y +PTP+Q PI + G++L+ A+
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQ 204
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 89.0 bits (211), Expect = 2e-18
Identities = 44/85 (51%), Positives = 56/85 (65%)
Frame = +3
Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
GPI ++ APTRELA QI A F +R + V+GG K EQ ++L+ G EIV+ATPG
Sbjct: 301 GPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPG 360
Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509
RLID L+ + R +YLVLDEAD
Sbjct: 361 RLIDMLKMKALTMMRASYLVLDEAD 385
Score = 64.5 bits (150), Expect = 6e-11
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643
RM D+GFEPQ+R I+ QIRPDRQTL++SAT P +V+KLA +L +
Sbjct: 386 RMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSD 430
Score = 62.5 bits (145), Expect = 2e-10
Identities = 23/58 (39%), Positives = 38/58 (65%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
+ VSG +VH P++ FE+ F + +K Y++PT IQ Q PI +SG++++G+AK
Sbjct: 216 IRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAK 273
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGE 255
++TGSGKT A++LP IVHI +QP ++R E
Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDE 300
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/84 (47%), Positives = 56/84 (66%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
P A++L+PTRELA QI A F + + V+ +GG P +Q R+LERG +I++ATPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
L D LE+ ++Q +L LDEAD
Sbjct: 290 LNDLLERARVSMQMIRFLALDEAD 313
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 4/55 (7%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEGLLGETTFRSI 661
RMLDMGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA + F ++
Sbjct: 314 RMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAV 368
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ A+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQ 196
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 86.6 bits (205), Expect = 1e-17
Identities = 40/84 (47%), Positives = 56/84 (66%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
P A++L+PTRELA QI A F + + V+ +GG P +Q R+LERG +I++ATPGR
Sbjct: 230 PFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGR 289
Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
L D LE+ ++Q +L LDEAD
Sbjct: 290 LNDLLERARVSMQMIRFLALDEAD 313
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 4/55 (7%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEGLLGETTFRSI 661
RMLDMGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA + F ++
Sbjct: 314 RMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAV 368
Score = 36.3 bits (80), Expect = 0.018
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ A+
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQ 196
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 84.2 bits (199), Expect = 7e-17
Identities = 45/88 (51%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
GPI LV+APTREL QQI F +R V+GG+ +Q +L+RG EIV+ TPG
Sbjct: 602 GPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPG 661
Query: 435 RLIDFL--EKG-TTNLQRCTYLVLDEAD 509
R+ID L G TNL+R T+LV+DEAD
Sbjct: 662 RMIDILCTSSGKITNLRRVTFLVMDEAD 689
Score = 61.7 bits (143), Expect = 4e-10
Identities = 26/45 (57%), Positives = 38/45 (84%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643
RM DMGFEPQI +II+ IRP+RQT+++SAT+P++V+ LA +L +
Sbjct: 690 RMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNK 734
Score = 50.4 bits (115), Expect = 1e-06
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +2
Query: 8 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
V G +V PI+++ + + +K + Y++P PIQ Q PI MSG++ +GVAK
Sbjct: 519 VHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAK 574
Score = 41.9 bits (94), Expect = 4e-04
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGE 255
++TGSGKTL ++LP + HI +QPP+ G+
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGD 601
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 82.6 bits (195), Expect = 2e-16
Identities = 45/88 (51%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
GPI LV+APTREL QQI F + V+GG+ +Q +L+RG EIV+ TPG
Sbjct: 469 GPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPG 528
Query: 435 RLIDFL--EKG-TTNLQRCTYLVLDEAD 509
R+ID L G TNL+R TYLV+DEAD
Sbjct: 529 RMIDILCTSSGKITNLRRVTYLVMDEAD 556
Score = 62.9 bits (146), Expect = 2e-10
Identities = 26/45 (57%), Positives = 38/45 (84%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643
RM DMGFEPQI +I++ IRPDRQT+++SAT+P++V+ LA +L +
Sbjct: 557 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNK 601
Score = 53.6 bits (123), Expect = 1e-07
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = +2
Query: 8 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
V G +V PIQ++ + + +K + Y++P PIQAQ PI MSG++ +GVAK
Sbjct: 386 VHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAK 441
Score = 41.9 bits (94), Expect = 4e-04
Identities = 15/29 (51%), Positives = 23/29 (79%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGE 255
++TGSGKTL ++LP + HI +QPP+ G+
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGD 468
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 81.8 bits (193), Expect = 4e-16
Identities = 38/85 (44%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVIATPG 434
P+ LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R L+ GV++ + TPG
Sbjct: 179 PLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPG 235
Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509
R+ID +++G NL ++VLDEAD
Sbjct: 236 RVIDLMKRGALNLSEVQFVVLDEAD 260
Score = 35.1 bits (77), Expect = 0.042
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
+ML +GF + I+E++ RQ++M+SAT P ++ L + L
Sbjct: 261 QMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYL 303
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 81.4 bits (192), Expect = 5e-16
Identities = 40/89 (44%), Positives = 55/89 (61%)
Frame = +3
Query: 243 SER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVI 422
S++ P LVL+PTRELA QI V + G +++ CV+GG+ K Q + GV+IVI
Sbjct: 187 SKKVNPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVI 246
Query: 423 ATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
TPGRL D +E L +++VLDEAD
Sbjct: 247 GTPGRLRDLIESNVLRLSDVSFVVLDEAD 275
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGETTFRSIL 664
RMLDMGFE +R I+ RQ +M+SATWP +V KLA+ + + I+
Sbjct: 276 RMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKVII 327
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +2
Query: 2 VTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP + G++L+G+AK
Sbjct: 102 VTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAK 159
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHI 225
++TGSGKTLA+ +PAI+H+
Sbjct: 158 AKTGSGKTLAFGIPAIMHV 176
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/85 (43%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVIATPG 434
P LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L G+++ + TPG
Sbjct: 191 PQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPG 247
Query: 435 RLIDFLEKGTTNLQRCTYLVLDEAD 509
R+ID +++G NL ++VLDEAD
Sbjct: 248 RIIDLMKRGALNLSEVQFVVLDEAD 272
Score = 33.9 bits (74), Expect = 0.098
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
+ML +GF + I++++ RQ++M+SAT P ++ L + L
Sbjct: 273 QMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYL 315
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 216
K G+++ + L + ++ R++TG+GKTLA+ +P I
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 76.6 bits (180), Expect = 1e-14
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
P LVLAPTRELA+Q+++ + Y+ CV+GG Q L RGV++V+ TPGR
Sbjct: 181 PKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR 238
Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
+ID +E + L YLVLDEAD
Sbjct: 239 IIDLIEGRSLKLGEVEYLVLDEAD 262
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 28/43 (65%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
+ML +GFE + I+E + RQ++++SAT P VKKLA L
Sbjct: 263 QMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYL 305
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 74.9 bits (176), Expect = 4e-14
Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +3
Query: 255 GPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEI 416
GPI L++ P+RELA+Q ++Q A Y +R+ GG R Q ++RGV I
Sbjct: 222 GPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHI 281
Query: 417 VIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
V+ATPGRL D L K +L C YL LDEAD
Sbjct: 282 VVATPGRLKDMLAKKKMSLDACRYLTLDEAD 312
Score = 53.2 bits (122), Expect = 1e-07
Identities = 21/57 (36%), Positives = 38/57 (66%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 172
+ V+G ++ PI+ F++ FP V +K G +PTPIQ QG P+ ++G++++G+A
Sbjct: 134 IIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIA 190
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/43 (39%), Positives = 29/43 (67%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
R++D+GFE IR++ + + RQTL++SAT P +++ A L
Sbjct: 313 RLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSAL 355
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 74.1 bits (174), Expect = 7e-14
Identities = 37/88 (42%), Positives = 50/88 (56%)
Frame = +3
Query: 246 ER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 425
+R P+A+VLAPTREL Q++ A G + V GG P Q +++GVE++I
Sbjct: 183 QRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIG 242
Query: 426 TPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
TPGR++D L K T L VLDE D
Sbjct: 243 TPGRVVDLLSKHTIELDNIMTFVLDEVD 270
Score = 40.7 bits (91), Expect = 9e-04
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 14 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 172
G V P+ F P + ++T GY PTPIQ Q P A++GK+L+ A
Sbjct: 102 GSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASA 154
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 74.1 bits (174), Expect = 7e-14
Identities = 37/88 (42%), Positives = 50/88 (56%)
Frame = +3
Query: 246 ER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIA 425
+R P+A+VLAPTREL Q++ A G + V GG P Q +++GVE++I
Sbjct: 46 QRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIG 105
Query: 426 TPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
TPGR++D L K T L VLDE D
Sbjct: 106 TPGRVVDLLSKHTIELDNIMTFVLDEVD 133
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 72.5 bits (170), Expect = 2e-13
Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 6/91 (6%)
Frame = +3
Query: 255 GPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEI 416
GPIALV+ P+RELA+Q ++Q A Y +R+ GG R Q +++GV I
Sbjct: 173 GPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHI 232
Query: 417 VIATPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
V+ATPGRL D L K +L C L LDEAD
Sbjct: 233 VVATPGRLKDILAKKKMSLDACRLLTLDEAD 263
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/57 (38%), Positives = 38/57 (66%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 172
+TV+G ++ PI+ F + FP + + +K G PTPIQ QG P+ +SG++++G+A
Sbjct: 85 ITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIA 141
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
R++D+GFE IR + + + RQTL++SAT P +++ A L
Sbjct: 264 RLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSAL 306
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 175 TGSGKTLAYILPAIV 219
TGSGKTL ++LP I+
Sbjct: 143 TGSGKTLVFVLPMII 157
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 72.1 bits (169), Expect = 3e-13
Identities = 38/82 (46%), Positives = 48/82 (58%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
D L++ + VLDEAD
Sbjct: 170 DMLKRQSLRADNIKMFVLDEAD 191
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643
ML GF+ QI I + + P Q ++SAT P E ++ + +
Sbjct: 193 MLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSK 236
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 72.1 bits (169), Expect = 3e-13
Identities = 38/82 (46%), Positives = 47/82 (57%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVF 171
Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
D L + + VLDEAD
Sbjct: 172 DLLRRQSLRADAIKMFVLDEAD 193
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 71.7 bits (168), Expect = 4e-13
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
P +VL PTREL++Q+ +VA H + R+ V GG+ R Q L +++V+ TPGR
Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGR 249
Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
++ +E+G YLVLDEAD
Sbjct: 250 ILQHIEEGNMVYGDIAYLVLDEAD 273
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAI 216
S TGSGKTLAY+LP +
Sbjct: 156 SHTGSGKTLAYLLPIV 171
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 70.5 bits (165), Expect = 9e-13
Identities = 38/82 (46%), Positives = 47/82 (57%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVF 169
Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
D L + + VLDEAD
Sbjct: 170 DMLRRQSLRPDCIKMFVLDEAD 191
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643
ML GF+ QI I + + P Q ++SAT P E ++ + +
Sbjct: 193 MLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSK 236
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 67.3 bits (157), Expect = 9e-12
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
P LVL PTRELA+Q+ +G + + + C++GG Q L+RGV+IV+ TPGR
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGR 234
Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
+ D +E+ + + VLDEAD
Sbjct: 235 IKDHIERQNLDFSYLQFRVLDEAD 258
Score = 31.1 bits (67), Expect = 0.69
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 166 RSQTGSGKTLAYILPAIVHINNQP 237
R++TG GKTLA++LP + + N P
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGP 162
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 512 MLDMGFEPQIRKIIEQIRPDR--QTLMWSATWPKEVKKLAEGLL 637
ML MGF + I+ ++ QTL++SAT P VK ++ L
Sbjct: 260 MLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFL 303
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 65.3 bits (152), Expect = 3e-11
Identities = 31/82 (37%), Positives = 46/82 (56%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
A++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
D +KG L+ C LV+DEAD
Sbjct: 255 DLTKKGVCVLKDCAMLVMDEAD 276
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 190
FE+ + +G+ G+++P+PIQ + PIA++G +++ AK K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVK 616
++L F+P + ++I+ + +RQ LM+SAT+P VK
Sbjct: 277 KLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVK 312
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 65.3 bits (152), Expect = 3e-11
Identities = 31/82 (37%), Positives = 46/82 (56%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
A++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRIL 254
Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
D +KG L+ C LV+DEAD
Sbjct: 255 DLTKKGVCVLKDCAMLVMDEAD 276
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 190
FE+ + +G+ G+++P+PIQ + PIA++G +++ AK K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVK 616
++L F+P + ++I+ + +RQ LM+SAT+P VK
Sbjct: 277 KLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVTVK 312
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
A+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
D +KG L+ C+ LV+DEAD
Sbjct: 262 DLTKKGVCVLKDCSVLVMDEAD 283
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 190
FE+ + G+ G++ P+PIQ + PIA++G++++ AK K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
++L F+P + +I + RQ LM+SAT+P VK + L
Sbjct: 284 KLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFL 326
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 64.9 bits (151), Expect = 5e-11
Identities = 30/82 (36%), Positives = 48/82 (58%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
A+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRIL 261
Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
D +KG L+ C+ LV+DEAD
Sbjct: 262 DLTKKGVCVLKDCSVLVMDEAD 283
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 190
FE+ + G+ G++ P+PIQ + PIA++G++++ AK K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
Score = 33.5 bits (73), Expect = 0.13
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
++L F+P + +I + RQ LM+SAT+P VK + L
Sbjct: 284 KLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFL 326
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 64.5 bits (150), Expect = 6e-11
Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
LVL+P+RELA Q ++ G HT+ + C+ GG E + LERGV V TPGR+
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGVHAVSGTPGRVY 152
Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
D +++G+ + LVLDE+D
Sbjct: 153 DMIKRGSLQTKAVKLLVLDESD 174
Score = 38.3 bits (85), Expect = 0.005
Identities = 42/199 (21%), Positives = 76/199 (38%)
Frame = +2
Query: 32 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAKRWPTSCQ 211
PI+ F++ D V +GV GYK+P+ IQ + + G++++ A+ K TS
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGK---TSMI 76
Query: 212 PLCT*TTNRLFGEVRSDCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVWWCS*KRASP 391
+ + + L + +++ + H H C+ S
Sbjct: 77 AISVCQIVNISSR-KVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIK 135
Query: 392 GLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHIFSS**G*RMLDMGFEPQIRKIIEQIRPD 571
L G + + +G Q AV + ML G + QI + + D
Sbjct: 136 KLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHD 195
Query: 572 RQTLMWSATWPKEVKKLAE 628
Q + SAT P+E+ ++ E
Sbjct: 196 IQVCLISATLPQEILEMTE 214
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 63.7 bits (148), Expect = 1e-10
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
A++L PTRELA Q QV + + GG R+ L + V +++ TPGR++
Sbjct: 225 AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRIL 284
Query: 444 DFLEKGTTNLQRCTYLVLDEAD 509
D +KG L+ C LV+DEAD
Sbjct: 285 DLAKKGVCVLKDCAMLVMDEAD 306
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
++L + F+P I ++I+ + RQ LM+SAT+P VK + L
Sbjct: 307 KLLSVEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYL 349
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 190
FE+ + +G+ G+++P+PIQ + PIA++G +++ AK K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 63.7 bits (148), Expect = 1e-10
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
G AL+L+PTR+LA+Q + + G + +R + + GG +Q +L +G +++IATPG
Sbjct: 98 GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPG 157
Query: 435 RLIDFL-EKGTTNLQRCTYLVLDEAD 509
RL+ L E L+ Y+V DEAD
Sbjct: 158 RLMHLLSEVDDMTLRTVEYVVFDEAD 183
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
FE N V +K GYK PTPIQ + P+ +SG ++V +A+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMAR 73
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = +2
Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643
+ MGF Q+ +I+ Q+ +RQTL++SAT P + + A+ L E
Sbjct: 185 LFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAKAGLRE 228
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHINNQPPIRRGEVRLL 267
++TGSGKT A+++P + + P +G VR L
Sbjct: 72 ARTGSGKTAAFLIPMLEKLKQHVP--QGGVRAL 102
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 62.1 bits (144), Expect = 3e-10
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 440
AL+L+PTRELA Q ++ G H + + C+ GG E R LE GV +V TPGR+
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGVHVVSGTPGRV 164
Query: 441 IDFLEKGTTNLQRCTYLVLDEAD 509
D +++ + + L+LDE+D
Sbjct: 165 CDMIKRRSLRTRAIKLLILDESD 187
Score = 33.5 bits (73), Expect = 0.13
Identities = 43/213 (20%), Positives = 82/213 (38%)
Frame = +2
Query: 5 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVP 184
T G+E PI F + + V +GV G+++P+ IQ + + G++++ A+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 185 AKRWPTSCQPLCT*TTNRLFGEVRSDCFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVW 364
K + +C + EV++ L + ++T + H H C+
Sbjct: 84 GKTSMIALS-VCQ-VVDTSSREVQA--LILSPTRELATQTEKTIQAIGLHANIQAHACIG 139
Query: 365 WCS*KRASPGLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHIFSS**G*RMLDMGFEPQIR 544
S L G + + + + A+ + ML GF+ QI
Sbjct: 140 GNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIY 199
Query: 545 KIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGE 643
+ + PD Q + SAT P E+ ++ + E
Sbjct: 200 DVYRYLPPDLQVCLVSATLPHEILEMTSKFMTE 232
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 59.3 bits (137), Expect = 2e-09
Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +3
Query: 267 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 446
L+L PTRELA QI + + + ++ + GG REQ L +IV+ATPGR+ID
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Query: 447 FLEKG-TTNLQRCTYLVLDEAD 509
L + +L L+LDEAD
Sbjct: 302 HLRNSMSVDLDDLAVLILDEAD 323
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +2
Query: 5 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 172
TV GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASA 211
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628
R+L GF +I +++ RQT+++SAT +EVK+L +
Sbjct: 324 RLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVK 363
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 58.8 bits (136), Expect = 3e-09
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Frame = +3
Query: 240 YSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC--VFGGAPKREQARDLERGVE 413
++ R G LV+ PTRELA Q VA + Y T V GG ++ +A L +GV
Sbjct: 221 FTPRNGTGVLVICPTRELAIQSYGVAKEL--LKYHSQTVGKVIGGEKRKTEAEILAKGVN 278
Query: 414 IVIATPGRLIDFLEKGTTNL-QRCTYLVLDEAD 509
+++ATPGRL+D LE + + +LV+DEAD
Sbjct: 279 LLVATPGRLLDHLENTNGFIFKNLKFLVMDEAD 311
Score = 34.7 bits (76), Expect = 0.056
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
FE + D + +K MG+ T IQA+ P M G++++G A+
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAAR 199
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLA 625
R+L+ FE ++KI+ + RQT ++SAT +V+ LA
Sbjct: 312 RILEQNFEEDLKKILNLLPKTRQTSLFSATQSAKVEDLA 350
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 216
K+ G R + + + ++ ++TGSGKTLA+++PA+
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 58.8 bits (136), Expect = 3e-09
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Frame = +3
Query: 240 YSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 419
+S R G +V+ PTRELA Q + VA + + V GG +R +A+ + G +V
Sbjct: 156 FSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLV 215
Query: 420 IATPGRLIDFLEKGTTNL-QRCTYLVLDEAD 509
IATPGRL+D L+ + + LV+DEAD
Sbjct: 216 IATPGRLLDHLQNTKAFIYKHLKCLVIDEAD 246
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLA 625
R+L+ FE + KI++ + RQT ++SAT +VK LA
Sbjct: 247 RILEENFEEDMNKILKILPKTRQTALFSATQTSKVKDLA 285
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 216
K+ G Q + + K+ ++TGSGKTLA+++PA+
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
F+ + + +K MG++ T IQA + GK+++G A+
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAAR 134
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 58.8 bits (136), Expect = 3e-09
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKREQARDLERGVEIVIATPG 434
P +VL PT ELA Q+ + R+ V GG +R Q +LE+GV+++IATPG
Sbjct: 452 PRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPG 511
Query: 435 RLIDFLEKGTTNLQRCTYLVLDEADV 512
R + +G L +LDE D+
Sbjct: 512 RFTYLMNEGILGLSNLRCAILDEVDI 537
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 172 QTGSGKTLAYILPAIVHINNQ 234
Q+GSGKTLAY++P I + +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREE 439
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 58.0 bits (134), Expect = 5e-09
Identities = 41/101 (40%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
A VL+PTRELA QI + G +R + GG + +Q L + +++ATPGRL
Sbjct: 92 ACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLW 151
Query: 444 DFLE--KGTTNLQRCTYLVLDEADVCWIWDLNHKSEKSLSK 560
D + KG +L+ YLVLDEAD LN EKSL++
Sbjct: 152 DHMSDTKG-FSLKSLKYLVLDEADRL----LNEDFEKSLNQ 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/52 (28%), Positives = 32/52 (61%)
Frame = +2
Query: 20 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+A+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQ 54
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 57.6 bits (133), Expect = 7e-09
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 GPIALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLERGVEIVIATP 431
G ALV+ PTREL Q+ + H ++ V GG K ++ L +G+ I+IATP
Sbjct: 104 GTFALVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATP 163
Query: 432 GRLIDFLEKGTTNLQR-CTYLVLDEAD 509
GRL+D L+ + + + +++ DEAD
Sbjct: 164 GRLLDHLKNTASFVHKNLRWVIFDEAD 190
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 175 TGSGKTLAYILPAIVHINNQPP 240
TG+GKT+AY+ P I H+ P
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSP 97
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +2
Query: 92 MGYKEPTPIQAQGWPIAMSGKNLV 163
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 57.2 bits (132), Expect = 9e-09
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 443
AL++ PTRELA Q+ + + V+ + GG +Q R L+ EIV+ATPGRL
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLW 341
Query: 444 DFL---EKGTTNLQRCTYLVLDEAD 509
+ + EK L ++ VLDEAD
Sbjct: 342 ELMSAGEKHLVELHSLSFFVLDEAD 366
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 139 SYVWKEFSWRSQTGSGKTLAYILPAI 216
+Y K+ ++TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 IALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 434
+ ++++PTREL+ QI VA F T + V + + GG + + +E G ++I TPG
Sbjct: 92 MGVIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPG 151
Query: 435 RLIDFLEK-GTTNLQRCTYLVLDEAD 509
RL D +E+ + + L+LDEAD
Sbjct: 152 RLSDIMERMEILDFRNLEILILDEAD 177
Score = 35.5 bits (78), Expect = 0.032
Identities = 16/40 (40%), Positives = 29/40 (72%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628
R+L+MGF+ Q+ II ++ R+T ++SAT + V++LA+
Sbjct: 178 RLLEMGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAK 217
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +1
Query: 148 WKEFSWRSQTGSGKTLAYILPAI 216
+K+ + + TGSGKTLA+++P +
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLV 75
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 50.8 bits (116), Expect = 8e-07
Identities = 34/88 (38%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPG 434
G ALV+ PTRELA Q+ + G +R + + GG Q L IVI TPG
Sbjct: 126 GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPG 185
Query: 435 RLIDFLEKG---TTNLQRCTYLVLDEAD 509
R+ LE R +LVLDEAD
Sbjct: 186 RIKVLLENNPDVPPVFSRTKFLVLDEAD 213
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/40 (40%), Positives = 27/40 (67%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628
R+LD+GF+ ++R I + + RQTL++SAT ++ L E
Sbjct: 214 RVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLE 253
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
FE ++ + K +G ++PTP+Q P ++G++++G+A+
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQ 103
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +1
Query: 82 CKDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQP 237
CK+ G+++ + + ++ +QTGSGKT A+ LP + + P
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDP 124
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 50.0 bits (114), Expect = 1e-06
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Frame = +3
Query: 261 IALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDL-ERGVEIVIATPG 434
+ ++++PTREL+ QI +VA F T V + + GG L E G ++I TPG
Sbjct: 92 MGVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPG 151
Query: 435 RLIDFLEK-GTTNLQRCTYLVLDEAD 509
RL D +++ + + L+LDEAD
Sbjct: 152 RLSDMMKRMEFLDFRNLEILILDEAD 177
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628
R+LDMGF+ Q+ II ++ R+T ++SAT + V LA+
Sbjct: 178 RLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 217
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +1
Query: 175 TGSGKTLAYILPAIVHI---NNQPP 240
TGSGKTLA++LP I I N+ PP
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +3
Query: 264 ALVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE-IVIATPGR 437
A+++AP+REL QI ++V G + GGA + Q L++ IV+ TPGR
Sbjct: 194 AMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGR 253
Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
+ + + G + C +LVLDE D
Sbjct: 254 IAEISKGGKLHTHGCRFLVLDEVD 277
Score = 30.7 bits (66), Expect = 0.91
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 166 RSQTGSGKTLAYILPAIVHI 225
+S TGSGKTLAY+LP + I
Sbjct: 153 QSYTGSGKTLAYLLPILSEI 172
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 163
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 48.4 bits (110), Expect = 4e-06
Identities = 39/99 (39%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Frame = +3
Query: 231 PTAYSER*GPI-ALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLE 401
PT+ + PI ALV+ PTRELA Q A H S + G EQ R
Sbjct: 121 PTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQT 180
Query: 402 RGVEIVIATPGRLIDFLEKG---TTNLQRCTYLVLDEAD 509
+I++ATPGRL D +E T L+ LVLDEAD
Sbjct: 181 NPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEAD 219
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +2
Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 622
+LDMGF I +II + +RQT ++SAT P+EV+++
Sbjct: 221 LLDMGFRKDIERIISAVPKERQTFLFSATVPEEVRQI 257
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPP 240
KD G + + L K+ +++TG+GKT+A++LP+I + PP
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.4 bits (110), Expect = 4e-06
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +3
Query: 264 ALVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
AL+L PTRELA QI + A H T + G K +Q R +I+IATPGR
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGR 467
Query: 438 LIDFLEKG---TTNLQRCTYLVLDEADV 512
L+D +E T+ L ++DEAD+
Sbjct: 468 LLDHIENKSGLTSRLMALKLFIVDEADL 495
Score = 42.3 bits (95), Expect = 3e-04
Identities = 18/42 (42%), Positives = 32/42 (76%)
Frame = +2
Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
+LD+GF + KII+ + RQ+L++SAT PKEV+++++ +L
Sbjct: 496 LLDLGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVL 537
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +1
Query: 91 NGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 216
+G+ + + L++ K+ +++TG+GK++A++LPAI
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 47.6 bits (108), Expect = 7e-06
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = +3
Query: 267 LVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 440
L+L PTRELA QI + A H T + G + +Q R +I+IATPGRL
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 441 IDFLEKG---TTNLQRCTYLVLDEADVCWIWDLNHKSE 545
+D +E T+ L ++DEAD+ + DL K +
Sbjct: 516 LDHIENKSGLTSRLMALKLFIVDEADL--LLDLGFKRD 551
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/42 (42%), Positives = 33/42 (78%)
Frame = +2
Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLL 637
+LD+GF+ + KII+ + RQ+L++SAT PKEV+++++ +L
Sbjct: 543 LLDLGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQLVL 584
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +1
Query: 91 NGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 216
+G+ + + L++ K+ +++TG+GK++A++LPAI
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 46.8 bits (106), Expect = 1e-05
Identities = 38/99 (38%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +3
Query: 231 PTAYSER*GPI-ALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLE 401
P + R PI LV+ PTRELA Q A H S + G EQ R
Sbjct: 449 PASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQT 508
Query: 402 RGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEAD 509
+I++ATPGRL D +E + T L LVLDEAD
Sbjct: 509 NPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEAD 547
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +2
Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 622
+LDMGF I +II + RQT ++SAT P+EV+++
Sbjct: 549 LLDMGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQI 585
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRR 249
KD G + + L K+ +++TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASR 452
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 44.0 bits (99), Expect = 9e-05
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Frame = +3
Query: 231 PTAYSER*GPI-ALVLAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER 404
P + R PI LV+ PTRELA Q + + + V GG + R L++
Sbjct: 147 PASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQK 206
Query: 405 G-VEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEAD 509
+I++ATPGRL D ++ + T L LVLDEAD
Sbjct: 207 SPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEAD 245
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = +2
Query: 512 MLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 622
+LDMGF +I +II + RQT ++SAT EV+++
Sbjct: 247 LLDMGFRREIERIIAAVPKQRQTFLFSATVSDEVRQI 283
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +1
Query: 151 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRR 249
K+ +++TG+GKT+A++LP+I + PP R
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASR 150
Score = 27.5 bits (58), Expect = 8.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
F++ +G++ G+K T +Q P+ + GK+++ AK
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAK 125
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = +2
Query: 2 VTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGV 169
+ VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 125 IHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFAC 184
Query: 170 AKRVPAKRWPTSCQPL 217
A K + C L
Sbjct: 185 APTGSGKTFAFICPML 200
Score = 32.7 bits (71), Expect = 0.23
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGR 437
A++L+P RELA Q + G ++R P + A + +++I+TP R
Sbjct: 213 AVILSPARELAAQTAREGKKLIKGSNFHIRLMT----KPLVKTADFSKLWCDVLISTPMR 268
Query: 438 LIDFLEKGTTNLQRCTYLVLDEAD 509
L ++ +L + YLVLDE+D
Sbjct: 269 LKRAIKAKKIDLSKVEYLVLDESD 292
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEGLLGETTFRSI 661
R+LD F+ Q+ II Q+ RQTL++SAT K+VK LA L + + S+
Sbjct: 229 RVLDSAFKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISV 279
Score = 39.1 bits (87), Expect = 0.003
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = +3
Query: 240 YSER*GPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 419
+S G ++++PTRELA Q V G + GG + ++ + I+
Sbjct: 138 WSPEDGVGCIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNIL 197
Query: 420 IATPGRLIDFLEKGTTNLQ--RCTYLVLDEAD 509
+ PGRL+ +++ T N + + L+LDEAD
Sbjct: 198 VCAPGRLLQHMDE-TPNFECPQLQILILDEAD 228
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +1
Query: 106 TDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQ 234
TD S++ + + ++ ++TGSGKTLA+++P + ++ +
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = +3
Query: 387 ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEAD 509
+++LE V+I++ATPGRL+D + KG T L+ YLV+DE D
Sbjct: 159 SQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETD 200
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHINNQPPIR 246
S TGSGKTL+Y LP IV + P+R
Sbjct: 69 SPTGSGKTLSYALP-IVQLLASRPVR 93
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 431
ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 432 GRLIDFLEKGTTNLQRCTYLVLDEAD 509
GR++ + +L+ + +LDE D
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECD 200
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 431
ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP
Sbjct: 34 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 91
Query: 432 GRLIDFLEKGTTNLQRCTYLVLDEAD 509
GR++ + +L+ + +LDE D
Sbjct: 92 GRVLALAREKDLSLKNVRHFILDECD 117
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATP 431
ALVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TP
Sbjct: 117 ALVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTP 174
Query: 432 GRLIDFLEKGTTNLQRCTYLVLDEAD 509
GR++ + +L+ + +LDE D
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECD 200
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 37.9 bits (84), Expect = 0.006
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA--RDLERGVEIVIATP 431
P AL + PTRELA Q +V G + + + + A R +VI TP
Sbjct: 163 PQALCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTP 222
Query: 432 GRLIDFLEKGTTNLQRCTYLVLDEAD 509
G L ++ L LV DEAD
Sbjct: 223 GTLKKWMAFKRLGLNHLKILVFDEAD 248
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 37.1 bits (82), Expect = 0.010
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 261 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 440
+ ++++PTREL+ QI +VA + + V E E G ++I TPGRL
Sbjct: 93 MGVIISPTRELSAQIHKVARAV-RLDFAKCREVEADMNTLE-----EEGANLLIGTPGRL 146
Query: 441 IDFLEK-GTTNLQRCTYLVLDEAD 509
D +++ + + L+LDEAD
Sbjct: 147 SDMMKRMEFLDFRNLEILILDEAD 170
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +2
Query: 509 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 628
R+LDMGF+ Q+ II ++ R+T ++SAT + V LA+
Sbjct: 171 RLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 210
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +1
Query: 175 TGSGKTLAYILPAIVHI---NNQPP 240
TGSGKTLA++LP I I N+ PP
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP 87
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 35.1 bits (77), Expect = 0.042
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER-GVEIVIATPG 434
P L L P++ A Q++ V + + GAP Q L+ E ++ATP
Sbjct: 197 PFLLYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGLKSVEPEFIVATPE 255
Query: 435 RLIDFLEKGTTNLQRCTYLVLDE 503
RL++ + ++ + LV+DE
Sbjct: 256 RLLEIVTLKGVDISNVSLLVIDE 278
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 34.7 bits (76), Expect = 0.056
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Frame = +3
Query: 264 ALVLAPTRELAQQIQQVAADFGHTSY--VRNTCVF----GGAPKREQARDLERGVEIVIA 425
A+++ PTREL Q+ +VA S V+ V GG +R ++ I++A
Sbjct: 147 AVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVA 206
Query: 426 TPGRLIDFLEKGTTNLQRCTYLVLDEAD 509
T L LEK + LV+DE D
Sbjct: 207 TVASLCHMLEKHIFRIDSVRVLVVDEVD 234
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +1
Query: 169 SQTGSGKTLAYILPAIVHINNQ 234
+QTGSGKTL Y+L IN Q
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ 141
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +1
Query: 151 KEFSWRSQTGSGKTLAYILPAI 216
K+ R++TGSGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
Score = 30.7 bits (66), Expect = 0.91
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Frame = +3
Query: 258 PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCV-FGGAPKREQARDLERGV-EIVIATP 431
P A +L P+REL QQ+ + V+ V + R+ G+ EI+++TP
Sbjct: 121 PSAFILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTP 180
Query: 432 GRLIDFLEKG----TTNLQRCTYLVLDEADV 512
+ G T + + LVLDEAD+
Sbjct: 181 ACIPKCFAAGVLEPTAVSESLSILVLDEADL 211
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 44 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 175
FEE + + + G ++PT IQ P + GK++V AK
Sbjct: 48 FEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAK 91
>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
similarity to mannosidase [gi:5359712] from Cellulomonas
fimi
Length = 944
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +2
Query: 20 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA----QGWPIAMSGKNLVGVAKRVPA 187
E+ P +F++ + V ++G I+A +GW I + K L G K VP
Sbjct: 529 EIQYPEDFFKDTYYKYGFNPEVGSVGMPVAETIRATMPPEGWTIPLFKKGLDGFIKEVPN 588
Query: 188 KRW 196
+ W
Sbjct: 589 RMW 591
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 85 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINN 231
+D+G R + + K+ ++TGSGKT Y+ P I + N
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At4g21390.1 68417.m03090 S-locus lectin protein kinase family
protein contains Pfam profiles: PF00954 S-locus
glycoprotein family, PF00069 protein kinase domain,
PF01453 lectin (probable mannose binding)
Length = 849
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -3
Query: 616 LHFFGPSS*PHQSLSVWAYLLNDFSDLWFKSHIQHTSASSRTKYVHRCKLVVPFSKKSIN 437
L FF P S H+ L +W + D + +W + S S + +V K+I
Sbjct: 53 LGFFSPGSSTHRFLGIWYGNIEDKAVVWVANRATPISDQSGVLMISNDGNLVLLDGKNIT 112
Query: 436 LPGVAMTISTPLSKSRACSL 377
+ + ST + +R S+
Sbjct: 113 VWSSNIESSTTNNNNRVVSI 132
>At1g11920.1 68414.m01376 pectate lyase family protein similar to
pectate lyase GI:14289169 from [Salix gilgiana]
Length = 384
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +1
Query: 121 SSRLADSYVWKEFSWRSQTGSGKTLAYILPA 213
+ R+ Y WK + WR+ K AY +P+
Sbjct: 313 TKRIDSGYDWKRWKWRTSKDVFKNGAYFVPS 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,808,619
Number of Sequences: 28952
Number of extensions: 350753
Number of successful extensions: 1190
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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