BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0816 (453 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 113 2e-26 SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 104 7e-24 SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 66 2e-12 SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 64 1e-11 SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 54 8e-09 SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 8e-09 SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 54 1e-08 SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 52 4e-08 SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 50 2e-07 SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 45 5e-06 SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 44 8e-06 SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 43 2e-05 SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 43 2e-05 SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 41 8e-05 SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 2e-04 SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 39 3e-04 SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 39 4e-04 SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 38 0.001 SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 37 0.001 SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.004 SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 34 0.009 SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 31 0.083 SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 31 0.083 SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 28 0.58 SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 0.77 SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.3 SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 1.3 SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 1.8 SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 1.8 SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 3.1 SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 25 4.1 SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 24 9.5 SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 24 9.5 >SPAC1006.07 |||translation initiation factor eIF4A|Schizosaccharomyces pombe|chr 1|||Manual Length = 392 Score = 113 bits (271), Expect = 2e-26 Identities = 52/67 (77%), Positives = 62/67 (92%) Frame = +2 Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430 +L RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTR LAQQIQKVV+ALGD Sbjct: 53 ILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGD 112 Query: 431 XLNAKCH 451 +N +CH Sbjct: 113 LMNVECH 119 Score = 81.8 bits (193), Expect = 4e-17 Identities = 34/48 (70%), Positives = 44/48 (91%) Frame = +3 Query: 108 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 251 ++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMP 52 >SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosaccharomyces pombe|chr 1|||Manual Length = 394 Score = 104 bits (249), Expect = 7e-24 Identities = 52/76 (68%), Positives = 62/76 (81%), Gaps = 3/76 (3%) Frame = +2 Query: 233 ATRNNALLQ---GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQI 403 A ++ A++Q GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTR LA QI Sbjct: 46 AVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQI 105 Query: 404 QKVVIALGDXLNAKCH 451 Q VV+ALGD +N +CH Sbjct: 106 QNVVLALGDHMNVQCH 121 Score = 58.8 bits (136), Expect = 4e-10 Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%) Frame = +3 Query: 108 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSK 260 M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ K Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICK 57 >SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccharomyces pombe|chr 2|||Manual Length = 485 Score = 66.5 bits (155), Expect = 2e-12 Identities = 32/64 (50%), Positives = 43/64 (67%) Frame = +2 Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDX 433 L GRD++A+A++GTGKTA F I L+++DT + Q LIL PTR LA Q +V LG Sbjct: 79 LSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKH 138 Query: 434 LNAK 445 +N K Sbjct: 139 MNVK 142 Score = 42.3 bits (95), Expect = 3e-05 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Frame = +3 Query: 60 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 227 +N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69 Query: 228 IQQRAI 245 IQ+ +I Sbjct: 70 IQEESI 75 >SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces pombe|chr 2|||Manual Length = 503 Score = 63.7 bits (148), Expect = 1e-11 Identities = 29/61 (47%), Positives = 44/61 (72%) Frame = +2 Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDXLNA 442 R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+R LA+QI VV +G Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213 Query: 443 K 445 K Sbjct: 214 K 214 Score = 43.6 bits (98), Expect = 1e-05 Identities = 17/33 (51%), Positives = 28/33 (84%) Frame = +3 Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245 V++F+++ LK ELL+GIY+ F+KPS IQ++A+ Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145 >SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharomyces pombe|chr 3|||Manual Length = 595 Score = 54.4 bits (125), Expect = 8e-09 Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 6/60 (10%) Frame = +2 Query: 254 LQGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRXLAQQIQKVV 415 L+G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTR LAQQ+ V+ Sbjct: 49 LEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108 Score = 32.7 bits (71), Expect = 0.027 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +3 Query: 150 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245 +TF D NL L R I+ FEKP+++Q I Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45 >SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccharomyces pombe|chr 2|||Manual Length = 453 Score = 54.4 bits (125), Expect = 8e-09 Identities = 29/65 (44%), Positives = 41/65 (63%) Frame = +2 Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430 +L+GR+ I A++G+GKTA F++ I+++ ALIL PTR LA QI + ALG Sbjct: 41 ILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGA 100 Query: 431 XLNAK 445 LN K Sbjct: 101 NLNLK 105 >SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 465 Score = 53.6 bits (123), Expect = 1e-08 Identities = 26/65 (40%), Positives = 42/65 (64%) Frame = +2 Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430 +L RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTR LA QI + A+G Sbjct: 80 VLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGG 139 Query: 431 XLNAK 445 + + Sbjct: 140 SIGVR 144 Score = 31.5 bits (68), Expect = 0.062 Identities = 20/78 (25%), Positives = 36/78 (46%) Frame = +3 Query: 12 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 191 M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59 Query: 192 GIYAYGFEKPSAIQQRAI 245 GF+ P+ IQQ AI Sbjct: 60 ACEKLGFKTPTPIQQEAI 77 >SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosaccharomyces pombe|chr 1|||Manual Length = 848 Score = 52.0 bits (119), Expect = 4e-08 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 2/57 (3%) Frame = +2 Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRXLAQQIQKVV 415 LL+GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P R LA Q KVV Sbjct: 103 LLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVV 159 Score = 31.5 bits (68), Expect = 0.062 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245 F M L + LLR I+ GF+ P+ IQ++ I Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100 >SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosaccharomyces pombe|chr 1|||Manual Length = 434 Score = 50.0 bits (114), Expect = 2e-07 Identities = 26/49 (53%), Positives = 32/49 (65%) Frame = +2 Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQ 406 G DV+ QA+SG GKTA F +S LQQI+ E L+L TR LA QI+ Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIK 136 Score = 32.7 bits (71), Expect = 0.027 Identities = 17/30 (56%), Positives = 18/30 (60%) Frame = +3 Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245 F D LK ELLR I GFE PS +QQ I Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCI 82 >SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 648 Score = 45.2 bits (102), Expect = 5e-06 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%) Frame = +2 Query: 260 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRXLAQQI 403 G D+I +A +G+GKT F I IL+ + + QAL++APTR LA QI Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQI 208 >SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 735 Score = 44.4 bits (100), Expect = 8e-06 Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 4/62 (6%) Frame = +2 Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRXLAQQIQKVVIA 421 L+GRD++ A++G+GKT F + +++ + TS+ AL+++PTR LA Q + ++ Sbjct: 74 LKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVK 133 Query: 422 LG 427 +G Sbjct: 134 IG 135 >SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 754 Score = 43.2 bits (97), Expect = 2e-05 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +2 Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRXLAQQIQKV 412 L G+D++ A +G+GKTA F + IL+++ + + LIL PTR LA Q V Sbjct: 294 LLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSV 349 Score = 31.9 bits (69), Expect = 0.047 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +3 Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245 +F MNL +L+G+ GFE P+ IQ + I Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290 >SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 43.2 bits (97), Expect = 2e-05 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 8/74 (10%) Frame = +2 Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID--TSIRECQ------ALILAPTRXLAQQIQ 406 LLQ +D+I A++G+GKTA F I ++ I + E A++LAPTR LAQQIQ Sbjct: 283 LLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342 Query: 407 KVVIALGDXLNAKC 448 + L +C Sbjct: 343 VEGNKFAEPLGFRC 356 >SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 578 Score = 41.1 bits (92), Expect = 8e-05 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Frame = +2 Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRXLAQQIQKVVIA 421 LL GRDV+ A++G+GKT F I LQ ++ + + L+++PTR LA Q + + + Sbjct: 199 LLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNS 258 Query: 422 LGDXLNAK 445 L N K Sbjct: 259 LIQGTNLK 266 >SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 481 Score = 39.9 bits (89), Expect = 2e-04 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Frame = +2 Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRXLAQQIQK 409 RD++A A +G+GKT + ILQ++ + +A+I+APTR L +QI + Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133 >SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces pombe|chr 2|||Manual Length = 709 Score = 39.1 bits (87), Expect = 3e-04 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%) Frame = +2 Query: 224 CNPATRNNALLQGRDVIAQAQSGTGKTATFSISILQQ-------IDTSIRECQALILAPT 382 C PA N +D +AQ+G+GKT + + I+Q+ + T A+I+APT Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225 Query: 383 RXLAQQIQKVVIALGD 430 R L QQI V L + Sbjct: 226 RELCQQIYNVANKLNN 241 >SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces pombe|chr 2|||Manual Length = 606 Score = 38.7 bits (86), Expect = 4e-04 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%) Frame = +2 Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRXLAQQIQKV 412 L+ +D++ +A +G+GKT + + ++ DT ALI+APTR LA QI V Sbjct: 36 LKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91 >SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 578 Score = 37.5 bits (83), Expect = 0.001 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%) Frame = +2 Query: 251 LLQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRXLAQQI 403 LL GRDV+ A++G+GKT F +I +L + R +I++PTR LA QI Sbjct: 123 LLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQI 177 Score = 32.7 bits (71), Expect = 0.027 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +3 Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 251 +E F D+ L E + + I GFE + IQ+R+I P Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPP 122 >SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosaccharomyces pombe|chr 3|||Manual Length = 1014 Score = 37.1 bits (82), Expect = 0.001 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%) Frame = +2 Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRXLAQQI 403 A+ GRDVI A++G+GKT F + + + I ++ + A+I+ PTR LA QI Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507 Score = 26.2 bits (55), Expect = 2.3 Identities = 12/38 (31%), Positives = 22/38 (57%) Frame = +3 Query: 132 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245 D + V ++ L + + I + G+EKP++IQ +AI Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI 449 >SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1063 Score = 35.5 bits (78), Expect = 0.004 Identities = 22/68 (32%), Positives = 34/68 (50%) Frame = +2 Query: 215 KTFCNPATRNNALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLA 394 KT+ + A N L G VI + +GK+ + I ILQ + + A + PT+ LA Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369 Query: 395 QQIQKVVI 418 Q +K +I Sbjct: 370 QDQKKSLI 377 >SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosaccharomyces pombe|chr 2|||Manual Length = 550 Score = 34.3 bits (75), Expect = 0.009 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%) Frame = +2 Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRXLAQQIQKVVI 418 + GRD++ + +G+GKT ++ + + I+ L+LAPTR LA QIQ+ Sbjct: 157 MSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECT 216 Query: 419 ALG 427 G Sbjct: 217 KFG 219 Score = 28.3 bits (60), Expect = 0.58 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 242 V TF++ +L+ + GFE P+ IQQ+A Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152 >SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |Schizosaccharomyces pombe|chr 2|||Manual Length = 535 Score = 31.1 bits (67), Expect = 0.083 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Frame = +2 Query: 242 NNALLQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRXLAQQI 403 N + + QA++GTGKT F + + + + + ++IL+PTR LA QI Sbjct: 70 NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI 128 >SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Sum3|Schizosaccharomyces pombe|chr 3|||Manual Length = 636 Score = 31.1 bits (67), Expect = 0.083 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%) Frame = +2 Query: 230 PATRNNA--LLQGRDVIAQAQSGTGKTATFSISIL 328 P +N+ + GRD++A AQ+G+GKTA F IL Sbjct: 194 PVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228 >SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharomyces pombe|chr 2|||Manual Length = 307 Score = 28.3 bits (60), Expect = 0.58 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +3 Query: 123 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSKD 263 LDT+W V + NL+ + + I + F PS I + MP D Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230 >SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 466 Score = 27.9 bits (59), Expect = 0.77 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = +3 Query: 120 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 212 T D WD E FDD N + +GI+ F Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311 >SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces pombe|chr 2|||Manual Length = 505 Score = 27.1 bits (57), Expect = 1.3 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%) Frame = +2 Query: 290 GTGKTATFSISILQQI----DTSIRECQALILAP-TRXLAQQIQ 406 G G T F+ SILQQI + SI +C + +P R + ++IQ Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132 >SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 713 Score = 27.1 bits (57), Expect = 1.3 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Frame = +3 Query: 126 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKP--SAIQQRAIMPCSKDAMLSLKPSQELE 299 DTDWD +V + D++L+ RGI A G + + Q+ A + SK +LK ++ Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMNENLKAAKNQS 673 Query: 300 KLLLSLYRFYNKS 338 L+ ++ + S Sbjct: 674 SESLTSFKGHTDS 686 >SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual Length = 301 Score = 26.6 bits (56), Expect = 1.8 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = +1 Query: 97 DLREWTLGHLTPT 135 DLREWTLG L P+ Sbjct: 110 DLREWTLGFLQPS 122 >SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccharomyces pombe|chr 1|||Manual Length = 549 Score = 26.6 bits (56), Expect = 1.8 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 322 DSTTNRYKHS*MSSFDPGSHKXAGPTNSEG 411 D+ TNR + SSFD S P+N++G Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDG 516 >SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces pombe|chr 1|||Manual Length = 101 Score = 25.8 bits (54), Expect = 3.1 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 117 QGPFPEVHRNYLDPSMAHFWNPLANL 40 Q P P VH ++ PS A NPL ++ Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100 >SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosaccharomyces pombe|chr 3|||Manual Length = 164 Score = 25.4 bits (53), Expect = 4.1 Identities = 10/33 (30%), Positives = 16/33 (48%) Frame = +1 Query: 247 CLAPRTRCYRSSPVRNWKNCYFLYIDSTTNRYK 345 C R CYR+S + +K + + S N Y+ Sbjct: 5 CTLRRLECYRASRLMPYKPSFLFSLISNVNEYE 37 >SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 547 Score = 24.2 bits (50), Expect = 9.5 Identities = 9/25 (36%), Positives = 15/25 (60%) Frame = -1 Query: 93 RNYLDPSMAHFWNPLANLLTFFQTN 19 +NY++ S+ + PL NLL + N Sbjct: 395 KNYMEESLQKTYKPLPNLLQYLILN 419 >SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 539 Score = 24.2 bits (50), Expect = 9.5 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = -2 Query: 113 VHSRRSIVTTLILRWPIFGILWPI 42 +H +R + L++++PIF I W I Sbjct: 176 LHLQRILAILLLIQFPIFLIWWKI 199 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,922,521 Number of Sequences: 5004 Number of extensions: 39794 Number of successful extensions: 167 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 160 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 168258430 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -