SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0816
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...   113   2e-26
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...   104   7e-24
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    66   2e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc...    64   1e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    54   8e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    54   8e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    54   1e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    52   4e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    50   2e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy...    45   5e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    44   8e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    43   2e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    43   2e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    41   8e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    40   2e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    39   3e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    39   4e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    38   0.001
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    37   0.001
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    36   0.004
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    34   0.009
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S...    31   0.083
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    31   0.083
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    28   0.58 
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    28   0.77 
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p...    27   1.3  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   1.3  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     27   1.8  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    27   1.8  
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p...    26   3.1  
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc...    25   4.1  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    24   9.5  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    24   9.5  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score =  113 bits (271), Expect = 2e-26
 Identities = 52/67 (77%), Positives = 62/67 (92%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430
           +L  RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTR LAQQIQKVV+ALGD
Sbjct: 53  ILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGD 112

Query: 431 XLNAKCH 451
            +N +CH
Sbjct: 113 LMNVECH 119



 Score = 81.8 bits (193), Expect = 4e-17
 Identities = 34/48 (70%), Positives = 44/48 (91%)
 Frame = +3

Query: 108 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 251
           ++   ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP
Sbjct: 5   LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMP 52


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score =  104 bits (249), Expect = 7e-24
 Identities = 52/76 (68%), Positives = 62/76 (81%), Gaps = 3/76 (3%)
 Frame = +2

Query: 233 ATRNNALLQ---GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQI 403
           A ++ A++Q   GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTR LA QI
Sbjct: 46  AVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQI 105

Query: 404 QKVVIALGDXLNAKCH 451
           Q VV+ALGD +N +CH
Sbjct: 106 QNVVLALGDHMNVQCH 121



 Score = 58.8 bits (136), Expect = 4e-10
 Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
 Frame = +3

Query: 108 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSK 260
           M+   L T  D   V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+   K
Sbjct: 6   MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICK 57


>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 32/64 (50%), Positives = 43/64 (67%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDX 433
           L GRD++A+A++GTGKTA F I  L+++DT   + Q LIL PTR LA Q  +V   LG  
Sbjct: 79  LSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKH 138

Query: 434 LNAK 445
           +N K
Sbjct: 139 MNVK 142



 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +3

Query: 60  KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 227
           +N    D+ S+ G     P  +    + V +T    F+D  LK ELL GI+  GFE+PS 
Sbjct: 10  ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69

Query: 228 IQQRAI 245
           IQ+ +I
Sbjct: 70  IQEESI 75


>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 503

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 29/61 (47%), Positives = 44/61 (72%)
 Frame = +2

Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDXLNA 442
           R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+R LA+QI  VV  +G     
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213

Query: 443 K 445
           K
Sbjct: 214 K 214



 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 17/33 (51%), Positives = 28/33 (84%)
 Frame = +3

Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           V++F+++ LK ELL+GIY+  F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 54.4 bits (125), Expect = 8e-09
 Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 6/60 (10%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRXLAQQIQKVV 415
           L+G+D++AQA++G+GKTA + I IL+      QID + R   AL+L PTR LAQQ+  V+
Sbjct: 49  LEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108



 Score = 32.7 bits (71), Expect = 0.027
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 150 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           +TF D NL   L R I+   FEKP+++Q   I
Sbjct: 14  KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 54.4 bits (125), Expect = 8e-09
 Identities = 29/65 (44%), Positives = 41/65 (63%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430
           +L+GR+ I  A++G+GKTA F++ I+++         ALIL PTR LA QI +   ALG 
Sbjct: 41  ILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGA 100

Query: 431 XLNAK 445
            LN K
Sbjct: 101 NLNLK 105


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 26/65 (40%), Positives = 42/65 (64%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430
           +L  RDVI  AQ+G+GKTA F++ ++Q++  +     A++LAPTR LA QI +   A+G 
Sbjct: 80  VLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGG 139

Query: 431 XLNAK 445
            +  +
Sbjct: 140 SIGVR 144



 Score = 31.5 bits (68), Expect = 0.062
 Identities = 20/78 (25%), Positives = 36/78 (46%)
 Frame = +3

Query: 12  MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 191
           M+ S ++ +ED    S N   +   S       +    D+  ++  +TF ++ + +EL  
Sbjct: 1   MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59

Query: 192 GIYAYGFEKPSAIQQRAI 245
                GF+ P+ IQQ AI
Sbjct: 60  ACEKLGFKTPTPIQQEAI 77


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 52.0 bits (119), Expect = 4e-08
 Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRXLAQQIQKVV 415
           LL+GRDV+  A++G+GKTA F I +++ + +++     +ALIL+P R LA Q  KVV
Sbjct: 103 LLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVV 159



 Score = 31.5 bits (68), Expect = 0.062
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           F  M L + LLR I+  GF+ P+ IQ++ I
Sbjct: 71  FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 26/49 (53%), Positives = 32/49 (65%)
 Frame = +2

Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQ 406
           G DV+ QA+SG GKTA F +S LQQI+    E   L+L  TR LA QI+
Sbjct: 88  GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIK 136



 Score = 32.7 bits (71), Expect = 0.027
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +3

Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           F D  LK ELLR I   GFE PS +QQ  I
Sbjct: 53  FRDFLLKPELLRAITDSGFEHPSEVQQVCI 82


>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 648

 Score = 45.2 bits (102), Expect = 5e-06
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
 Frame = +2

Query: 260 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRXLAQQI 403
           G D+I +A +G+GKT  F I IL+    +   +  QAL++APTR LA QI
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQI 208


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 44.4 bits (100), Expect = 8e-06
 Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRXLAQQIQKVVIA 421
           L+GRD++  A++G+GKT  F + +++ +     TS+    AL+++PTR LA Q  + ++ 
Sbjct: 74  LKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVK 133

Query: 422 LG 427
           +G
Sbjct: 134 IG 135


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRXLAQQIQKV 412
           L G+D++  A +G+GKTA F + IL+++      +   + LIL PTR LA Q   V
Sbjct: 294 LLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSV 349



 Score = 31.9 bits (69), Expect = 0.047
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           +F  MNL   +L+G+   GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID--TSIRECQ------ALILAPTRXLAQQIQ 406
           LLQ +D+I  A++G+GKTA F I ++  I     + E        A++LAPTR LAQQIQ
Sbjct: 283 LLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342

Query: 407 KVVIALGDXLNAKC 448
                  + L  +C
Sbjct: 343 VEGNKFAEPLGFRC 356


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 41.1 bits (92), Expect = 8e-05
 Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRXLAQQIQKVVIA 421
           LL GRDV+  A++G+GKT  F I  LQ ++    +    + L+++PTR LA Q  + + +
Sbjct: 199 LLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNS 258

Query: 422 LGDXLNAK 445
           L    N K
Sbjct: 259 LIQGTNLK 266


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = +2

Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRXLAQQIQK 409
           RD++A A +G+GKT  +   ILQ++   +    +A+I+APTR L +QI +
Sbjct: 84  RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 39.1 bits (87), Expect = 3e-04
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
 Frame = +2

Query: 224 CNPATRNNALLQGRDVIAQAQSGTGKTATFSISILQQ-------IDTSIRECQALILAPT 382
           C PA  N      +D   +AQ+G+GKT  + + I+Q+       + T      A+I+APT
Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225

Query: 383 RXLAQQIQKVVIALGD 430
           R L QQI  V   L +
Sbjct: 226 RELCQQIYNVANKLNN 241


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 38.7 bits (86), Expect = 4e-04
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRXLAQQIQKV 412
           L+ +D++ +A +G+GKT  + +    ++   DT      ALI+APTR LA QI  V
Sbjct: 36  LKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRXLAQQI 403
           LL GRDV+  A++G+GKT  F   +I +L  +    R     +I++PTR LA QI
Sbjct: 123 LLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQI 177



 Score = 32.7 bits (71), Expect = 0.027
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 251
           +E F D+ L E + + I   GFE  + IQ+R+I P
Sbjct: 88  IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPP 122


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
 Frame = +2

Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRXLAQQI 403
           A+  GRDVI  A++G+GKT  F + + + I     ++  +   A+I+ PTR LA QI
Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507



 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           D  + V ++    L  + +  I + G+EKP++IQ +AI
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI 449


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 35.5 bits (78), Expect = 0.004
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = +2

Query: 215 KTFCNPATRNNALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLA 394
           KT+ + A   N L  G  VI    + +GK+  + I ILQ +     +  A  + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369

Query: 395 QQIQKVVI 418
           Q  +K +I
Sbjct: 370 QDQKKSLI 377


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 34.3 bits (75), Expect = 0.009
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
 Frame = +2

Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRXLAQQIQKVVI 418
           + GRD++  + +G+GKT ++ +  +  I+             L+LAPTR LA QIQ+   
Sbjct: 157 MSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECT 216

Query: 419 ALG 427
             G
Sbjct: 217 KFG 219



 Score = 28.3 bits (60), Expect = 0.58
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 242
           V TF++      +L+ +   GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152


>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 31.1 bits (67), Expect = 0.083
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +2

Query: 242 NNALLQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRXLAQQI 403
           N       + + QA++GTGKT  F +   + +       +  +  ++IL+PTR LA QI
Sbjct: 70  NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI 128


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 31.1 bits (67), Expect = 0.083
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +2

Query: 230 PATRNNA--LLQGRDVIAQAQSGTGKTATFSISIL 328
           P  +N+   +  GRD++A AQ+G+GKTA F   IL
Sbjct: 194 PVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 123 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSKD 263
           LDT+W   V   +  NL+ + +  I +  F  PS I  +  MP   D
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 0.77
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 120 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 212
           T D  WD   E FDD N  +   +GI+   F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311


>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
 Frame = +2

Query: 290 GTGKTATFSISILQQI----DTSIRECQALILAP-TRXLAQQIQ 406
           G G T  F+ SILQQI    + SI +C  +  +P  R + ++IQ
Sbjct: 89  GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = +3

Query: 126 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKP--SAIQQRAIMPCSKDAMLSLKPSQELE 299
           DTDWD +V +  D++L+    RGI A G  +    + Q+ A +  SK    +LK ++   
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMNENLKAAKNQS 673

Query: 300 KLLLSLYRFYNKS 338
              L+ ++ +  S
Sbjct: 674 SESLTSFKGHTDS 686


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +1

Query: 97  DLREWTLGHLTPT 135
           DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 322 DSTTNRYKHS*MSSFDPGSHKXAGPTNSEG 411
           D+ TNR +    SSFD  S     P+N++G
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDG 516


>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 117 QGPFPEVHRNYLDPSMAHFWNPLANL 40
           Q P P VH ++  PS A   NPL ++
Sbjct: 75  QNPPPSVHSSHKQPSKARSPNPLLSM 100


>SPCC16A11.07 |coq10||ubiquinone binding protein
           Coq10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 164

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 247 CLAPRTRCYRSSPVRNWKNCYFLYIDSTTNRYK 345
           C   R  CYR+S +  +K  +   + S  N Y+
Sbjct: 5   CTLRRLECYRASRLMPYKPSFLFSLISNVNEYE 37


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 93  RNYLDPSMAHFWNPLANLLTFFQTN 19
           +NY++ S+   + PL NLL +   N
Sbjct: 395 KNYMEESLQKTYKPLPNLLQYLILN 419


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 113 VHSRRSIVTTLILRWPIFGILWPI 42
           +H +R +   L++++PIF I W I
Sbjct: 176 LHLQRILAILLLIQFPIFLIWWKI 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,521
Number of Sequences: 5004
Number of extensions: 39794
Number of successful extensions: 167
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -