Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0816
(453 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 113 2e-26
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 104 7e-24
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 66 2e-12
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 64 1e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 54 8e-09
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 54 8e-09
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 54 1e-08
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 52 4e-08
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 50 2e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 45 5e-06
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 44 8e-06
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 43 2e-05
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 43 2e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 41 8e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 2e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 39 3e-04
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 39 4e-04
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 38 0.001
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 37 0.001
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 36 0.004
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 34 0.009
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 31 0.083
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 31 0.083
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 28 0.58
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 0.77
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 27 1.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 1.3
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 1.8
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 1.8
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 3.1
SPCC16A11.07 |coq10||ubiquinone binding protein Coq10|Schizosacc... 25 4.1
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 24 9.5
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 24 9.5
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 113 bits (271), Expect = 2e-26
Identities = 52/67 (77%), Positives = 62/67 (92%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430
+L RDV+AQAQSGTGKTATFSIS+LQ+IDTS+++CQALILAPTR LAQQIQKVV+ALGD
Sbjct: 53 ILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGD 112
Query: 431 XLNAKCH 451
+N +CH
Sbjct: 113 LMNVECH 119
Score = 81.8 bits (193), Expect = 4e-17
Identities = 34/48 (70%), Positives = 44/48 (91%)
Frame = +3
Query: 108 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 251
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMP 52
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 104 bits (249), Expect = 7e-24
Identities = 52/76 (68%), Positives = 62/76 (81%), Gaps = 3/76 (3%)
Frame = +2
Query: 233 ATRNNALLQ---GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQI 403
A ++ A++Q GRDVIAQAQSGTGKTATFSI ILQ ID S+R+ QALIL+PTR LA QI
Sbjct: 46 AVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQI 105
Query: 404 QKVVIALGDXLNAKCH 451
Q VV+ALGD +N +CH
Sbjct: 106 QNVVLALGDHMNVQCH 121
Score = 58.8 bits (136), Expect = 4e-10
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +3
Query: 108 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSK 260
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ K
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICK 57
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 66.5 bits (155), Expect = 2e-12
Identities = 32/64 (50%), Positives = 43/64 (67%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDX 433
L GRD++A+A++GTGKTA F I L+++DT + Q LIL PTR LA Q +V LG
Sbjct: 79 LSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGKH 138
Query: 434 LNAK 445
+N K
Sbjct: 139 MNVK 142
Score = 42.3 bits (95), Expect = 3e-05
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 60 KNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIYAYGFEKPSA 227
+N D+ S+ G P + + V +T F+D LK ELL GI+ GFE+PS
Sbjct: 10 ENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIFEAGFERPSP 69
Query: 228 IQQRAI 245
IQ+ +I
Sbjct: 70 IQEESI 75
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 63.7 bits (148), Expect = 1e-11
Identities = 29/61 (47%), Positives = 44/61 (72%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDXLNA 442
R++I Q+QSGTGKTA F++++L ++D S+ + QA+ LAP+R LA+QI VV +G
Sbjct: 154 RNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 213
Query: 443 K 445
K
Sbjct: 214 K 214
Score = 43.6 bits (98), Expect = 1e-05
Identities = 17/33 (51%), Positives = 28/33 (84%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
V++F+++ LK ELL+GIY+ F+KPS IQ++A+
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKAL 145
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 54.4 bits (125), Expect = 8e-09
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 6/60 (10%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQ------QIDTSIRECQALILAPTRXLAQQIQKVV 415
L+G+D++AQA++G+GKTA + I IL+ QID + R AL+L PTR LAQQ+ V+
Sbjct: 49 LEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVL 108
Score = 32.7 bits (71), Expect = 0.027
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 150 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+TF D NL L R I+ FEKP+++Q I
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETI 45
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.4 bits (125), Expect = 8e-09
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430
+L+GR+ I A++G+GKTA F++ I+++ ALIL PTR LA QI + ALG
Sbjct: 41 ILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPTRELAIQIDEQFAALGA 100
Query: 431 XLNAK 445
LN K
Sbjct: 101 NLNLK 105
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 53.6 bits (123), Expect = 1e-08
Identities = 26/65 (40%), Positives = 42/65 (64%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430
+L RDVI AQ+G+GKTA F++ ++Q++ + A++LAPTR LA QI + A+G
Sbjct: 80 VLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGG 139
Query: 431 XLNAK 445
+ +
Sbjct: 140 SIGVR 144
Score = 31.5 bits (68), Expect = 0.062
Identities = 20/78 (25%), Positives = 36/78 (46%)
Frame = +3
Query: 12 MSYSSERRSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLR 191
M+ S ++ +ED S N + S + D+ ++ +TF ++ + +EL
Sbjct: 1 MAPSEKKLTEDKKNSSLNKKIETSNS-SSEKSSENNNGDSQNNEAPKTFKELGVIDELCE 59
Query: 192 GIYAYGFEKPSAIQQRAI 245
GF+ P+ IQQ AI
Sbjct: 60 ACEKLGFKTPTPIQQEAI 77
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 52.0 bits (119), Expect = 4e-08
Identities = 26/57 (45%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSI--RECQALILAPTRXLAQQIQKVV 415
LL+GRDV+ A++G+GKTA F I +++ + +++ +ALIL+P R LA Q KVV
Sbjct: 103 LLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSPNRELALQTVKVV 159
Score = 31.5 bits (68), Expect = 0.062
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F M L + LLR I+ GF+ P+ IQ++ I
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTI 100
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 50.0 bits (114), Expect = 2e-07
Identities = 26/49 (53%), Positives = 32/49 (65%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQ 406
G DV+ QA+SG GKTA F +S LQQI+ E L+L TR LA QI+
Sbjct: 88 GTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIK 136
Score = 32.7 bits (71), Expect = 0.027
Identities = 17/30 (56%), Positives = 18/30 (60%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F D LK ELLR I GFE PS +QQ I
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCI 82
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 45.2 bits (102), Expect = 5e-06
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQALILAPTRXLAQQI 403
G D+I +A +G+GKT F I IL+ + + QAL++APTR LA QI
Sbjct: 159 GFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVVAPTRELAHQI 208
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 44.4 bits (100), Expect = 8e-06
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID----TSIRECQALILAPTRXLAQQIQKVVIA 421
L+GRD++ A++G+GKT F + +++ + TS+ AL+++PTR LA Q + ++
Sbjct: 74 LKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVK 133
Query: 422 LG 427
+G
Sbjct: 134 IG 135
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 43.2 bits (97), Expect = 2e-05
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRXLAQQIQKV 412
L G+D++ A +G+GKTA F + IL+++ + + LIL PTR LA Q V
Sbjct: 294 LLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSV 349
Score = 31.9 bits (69), Expect = 0.047
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 153 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+F MNL +L+G+ GFE P+ IQ + I
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTI 290
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 43.2 bits (97), Expect = 2e-05
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID--TSIRECQ------ALILAPTRXLAQQIQ 406
LLQ +D+I A++G+GKTA F I ++ I + E A++LAPTR LAQQIQ
Sbjct: 283 LLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Query: 407 KVVIALGDXLNAKC 448
+ L +C
Sbjct: 343 VEGNKFAEPLGFRC 356
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 41.1 bits (92), Expect = 8e-05
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID---TSIRECQALILAPTRXLAQQIQKVVIA 421
LL GRDV+ A++G+GKT F I LQ ++ + + L+++PTR LA Q + + +
Sbjct: 199 LLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSPTRELAIQTYENLNS 258
Query: 422 LGDXLNAK 445
L N K
Sbjct: 259 LIQGTNLK 266
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSI-RECQALILAPTRXLAQQIQK 409
RD++A A +G+GKT + ILQ++ + +A+I+APTR L +QI +
Sbjct: 84 RDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCEQIYR 133
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 39.1 bits (87), Expect = 3e-04
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +2
Query: 224 CNPATRNNALLQGRDVIAQAQSGTGKTATFSISILQQ-------IDTSIRECQALILAPT 382
C PA N +D +AQ+G+GKT + + I+Q+ + T A+I+APT
Sbjct: 169 CLPALLNT---DDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMAPT 225
Query: 383 RXLAQQIQKVVIALGD 430
R L QQI V L +
Sbjct: 226 RELCQQIYNVANKLNN 241
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 38.7 bits (86), Expect = 4e-04
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRXLAQQIQKV 412
L+ +D++ +A +G+GKT + + ++ DT ALI+APTR LA QI V
Sbjct: 36 LKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVAPTRELATQIFNV 91
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRXLAQQI 403
LL GRDV+ A++G+GKT F +I +L + R +I++PTR LA QI
Sbjct: 123 LLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISPTRELALQI 177
Score = 32.7 bits (71), Expect = 0.027
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 251
+E F D+ L E + + I GFE + IQ+R+I P
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPP 122
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 37.1 bits (82), Expect = 0.001
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRXLAQQI 403
A+ GRDVI A++G+GKT F + + + I ++ + A+I+ PTR LA QI
Sbjct: 451 AITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQI 507
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 132 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
D + V ++ L + + I + G+EKP++IQ +AI
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAI 449
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 35.5 bits (78), Expect = 0.004
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +2
Query: 215 KTFCNPATRNNALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLA 394
KT+ + A N L G VI + +GK+ + I ILQ + + A + PT+ LA
Sbjct: 311 KTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSLA 369
Query: 395 QQIQKVVI 418
Q +K +I
Sbjct: 370 QDQKKSLI 377
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 34.3 bits (75), Expect = 0.009
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQA-----LILAPTRXLAQQIQKVVI 418
+ GRD++ + +G+GKT ++ + + I+ L+LAPTR LA QIQ+
Sbjct: 157 MSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECT 216
Query: 419 ALG 427
G
Sbjct: 217 KFG 219
Score = 28.3 bits (60), Expect = 0.58
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRA 242
V TF++ +L+ + GFE P+ IQQ+A
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQA 152
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 31.1 bits (67), Expect = 0.083
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +2
Query: 242 NNALLQGRDVIAQAQSGTGKTATFSISILQQI-----DTSIRECQALILAPTRXLAQQI 403
N + + QA++GTGKT F + + + + + ++IL+PTR LA QI
Sbjct: 70 NEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQI 128
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 31.1 bits (67), Expect = 0.083
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 230 PATRNNA--LLQGRDVIAQAQSGTGKTATFSISIL 328
P +N+ + GRD++A AQ+G+GKTA F IL
Sbjct: 194 PVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 28.3 bits (60), Expect = 0.58
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 123 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSKD 263
LDT+W V + NL+ + + I + F PS I + MP D
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLND 230
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 0.77
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 120 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 212
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 27.1 bits (57), Expect = 1.3
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +2
Query: 290 GTGKTATFSISILQQI----DTSIRECQALILAP-TRXLAQQIQ 406
G G T F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.1 bits (57), Expect = 1.3
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +3
Query: 126 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKP--SAIQQRAIMPCSKDAMLSLKPSQELE 299
DTDWD +V + D++L+ RGI A G + + Q+ A + SK +LK ++
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSKKMNENLKAAKNQS 673
Query: 300 KLLLSLYRFYNKS 338
L+ ++ + S
Sbjct: 674 SESLTSFKGHTDS 686
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +1
Query: 97 DLREWTLGHLTPT 135
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 322 DSTTNRYKHS*MSSFDPGSHKXAGPTNSEG 411
D+ TNR + SSFD S P+N++G
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDG 516
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 117 QGPFPEVHRNYLDPSMAHFWNPLANL 40
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPCC16A11.07 |coq10||ubiquinone binding protein
Coq10|Schizosaccharomyces pombe|chr 3|||Manual
Length = 164
Score = 25.4 bits (53), Expect = 4.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +1
Query: 247 CLAPRTRCYRSSPVRNWKNCYFLYIDSTTNRYK 345
C R CYR+S + +K + + S N Y+
Sbjct: 5 CTLRRLECYRASRLMPYKPSFLFSLISNVNEYE 37
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 93 RNYLDPSMAHFWNPLANLLTFFQTN 19
+NY++ S+ + PL NLL + N
Sbjct: 395 KNYMEESLQKTYKPLPNLLQYLILN 419
>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 539
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 113 VHSRRSIVTTLILRWPIFGILWPI 42
+H +R + L++++PIF I W I
Sbjct: 176 LHLQRILAILLLIQFPIFLIWWKI 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,521
Number of Sequences: 5004
Number of extensions: 39794
Number of successful extensions: 167
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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