Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0816
         (453 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       41   5e-06
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.2  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.7  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 41.1 bits (92), Expect = 5e-06
 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 9/65 (13%)
 Frame = +2

Query: 251 LLQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRXLAQQI 403
           ++ GRD++A AQ+G+GKTA F++ I+     + +D  +     E Q +I++PTR L  QI
Sbjct: 230 IMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQI 289

Query: 404 QKVVI 418
            + ++
Sbjct: 290 WQQIV 294



 Score = 27.9 bits (59), Expect = 0.055
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 141 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHAL 227


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 285 SQELEKLLLSLYRFYNKSIQAFVNV 359
           S++ E+L+  L+R YNK I+   N+
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNM 48


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 269 HRVLGARHYCALLDCRRFFKTIGVYASQ 186
           H + G++H C++   R   K  GVY+ +
Sbjct: 101 HPLSGSKHLCSICGDRASGKHYGVYSCE 128


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 269 HRVLGARHYCALLDCRRFFKTIGVYASQ 186
           H + G++H C++   R   K  GVY+ +
Sbjct: 101 HPLSGSKHLCSICGDRASGKHYGVYSCE 128


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +2

Query: 170 PQRRIVERHIRLWF*KTFC----NPATRNNAL 253
           P +++    I  WF  TFC    N AT  NA+
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +3

Query: 219 PSAIQQRAIMPCSKDAMLSLKPSQELEKLLLSLYRFYNKSI 341
           PS        P S+  + +L+P    ++     YR YN ++
Sbjct: 393 PSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPAL 433


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -2

Query: 413 PPSEFVGPAXLWEPGSKLDIHECLYRFVVESI 318
           PP  +V    +W  G  + +   L  FVV  +
Sbjct: 254 PPVAYVKALDVWMAGCMMFVFAALGEFVVVKV 285


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +3

Query: 186  LRGIYAYGFEKPSAIQQRAIMPCSKDAMLSLKPSQELEK 302
            L  +YA   +K SA   + I+  S       +P Q+ ++
Sbjct: 1473 LHNLYAVPTDKKSACDSKLIVDHSSQKTQQQQPQQQQQQ 1511


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,495
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)