BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0816 (453 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 41 5e-06 DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 1.2 AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein... 23 1.2 AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein... 23 1.2 AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 2.1 AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 21 4.7 DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 21 6.3 AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 8.3 >DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. Length = 630 Score = 41.1 bits (92), Expect = 5e-06 Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 9/65 (13%) Frame = +2 Query: 251 LLQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIR----ECQALILAPTRXLAQQI 403 ++ GRD++A AQ+G+GKTA F++ I+ + +D + E Q +I++PTR L QI Sbjct: 230 IMNGRDLMACAQTGSGKTAAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQI 289 Query: 404 QKVVI 418 + ++ Sbjct: 290 WQQIV 294 Score = 27.9 bits (59), Expect = 0.055 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +3 Query: 141 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245 Q +E+F+ L+ +L I G++KP+ +Q+ A+ Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHAL 227 >DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine receptor beta1subunit protein. Length = 520 Score = 23.4 bits (48), Expect = 1.2 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +3 Query: 285 SQELEKLLLSLYRFYNKSIQAFVNV 359 S++ E+L+ L+R YNK I+ N+ Sbjct: 24 SEDEERLVRDLFRGYNKLIRPVQNM 48 >AY273778-1|AAP33487.1| 427|Apis mellifera ultraspiracle protein protein. Length = 427 Score = 23.4 bits (48), Expect = 1.2 Identities = 9/28 (32%), Positives = 16/28 (57%) Frame = -2 Query: 269 HRVLGARHYCALLDCRRFFKTIGVYASQ 186 H + G++H C++ R K GVY+ + Sbjct: 101 HPLSGSKHLCSICGDRASGKHYGVYSCE 128 >AF263459-1|AAF73057.1| 427|Apis mellifera ultraspiracle protein protein. Length = 427 Score = 23.4 bits (48), Expect = 1.2 Identities = 9/28 (32%), Positives = 16/28 (57%) Frame = -2 Query: 269 HRVLGARHYCALLDCRRFFKTIGVYASQ 186 H + G++H C++ R K GVY+ + Sbjct: 101 HPLSGSKHLCSICGDRASGKHYGVYSCE 128 >AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. Length = 735 Score = 22.6 bits (46), Expect = 2.1 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 4/32 (12%) Frame = +2 Query: 170 PQRRIVERHIRLWF*KTFC----NPATRNNAL 253 P +++ I WF TFC N AT NA+ Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAV 552 >AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. Length = 602 Score = 21.4 bits (43), Expect = 4.7 Identities = 10/41 (24%), Positives = 18/41 (43%) Frame = +3 Query: 219 PSAIQQRAIMPCSKDAMLSLKPSQELEKLLLSLYRFYNKSI 341 PS P S+ + +L+P ++ YR YN ++ Sbjct: 393 PSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPAL 433 >DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated ion channel subunit protein. Length = 391 Score = 21.0 bits (42), Expect = 6.3 Identities = 9/32 (28%), Positives = 14/32 (43%) Frame = -2 Query: 413 PPSEFVGPAXLWEPGSKLDIHECLYRFVVESI 318 PP +V +W G + + L FVV + Sbjct: 254 PPVAYVKALDVWMAGCMMFVFAALGEFVVVKV 285 >AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. Length = 1598 Score = 20.6 bits (41), Expect = 8.3 Identities = 10/39 (25%), Positives = 18/39 (46%) Frame = +3 Query: 186 LRGIYAYGFEKPSAIQQRAIMPCSKDAMLSLKPSQELEK 302 L +YA +K SA + I+ S +P Q+ ++ Sbjct: 1473 LHNLYAVPTDKKSACDSKLIVDHSSQKTQQQQPQQQQQQ 1511 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 130,495 Number of Sequences: 438 Number of extensions: 2887 Number of successful extensions: 9 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 146,343 effective HSP length: 53 effective length of database: 123,129 effective search space used: 11943513 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.2 bits)
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