Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0816
(453 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 92 2e-19
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 89 1e-18
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 89 2e-18
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 84 5e-17
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 74 4e-14
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 61 3e-10
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 61 3e-10
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 59 2e-09
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 59 2e-09
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 58 2e-09
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 54 5e-08
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 54 5e-08
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 54 5e-08
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 53 8e-08
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 52 2e-07
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 52 2e-07
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 52 2e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 49 1e-06
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 48 3e-06
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 48 4e-06
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 47 7e-06
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 46 9e-06
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 44 4e-05
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 44 4e-05
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 44 4e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 43 1e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 42 1e-04
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 42 2e-04
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 42 2e-04
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 42 2e-04
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 42 2e-04
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 42 3e-04
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 42 3e-04
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 41 3e-04
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 41 5e-04
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 40 6e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 39 0.001
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 39 0.001
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 39 0.002
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 38 0.002
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 38 0.002
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 38 0.003
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 38 0.003
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 38 0.004
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.004
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 37 0.007
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 36 0.013
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 36 0.013
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 36 0.013
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 36 0.017
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 36 0.017
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 35 0.030
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 35 0.030
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 35 0.030
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 35 0.030
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 35 0.030
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 33 0.068
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 33 0.090
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 32 0.16
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 31 0.28
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 31 0.36
At3g10020.1 68416.m01202 expressed protein 29 1.1
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 29 1.1
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 29 1.9
At1g76010.1 68414.m08825 expressed protein 28 3.4
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli... 27 4.5
At4g30790.1 68417.m04362 expressed protein 27 7.8
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 27 7.8
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 91.9 bits (218), Expect = 2e-19
Identities = 44/65 (67%), Positives = 52/65 (80%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDXL 436
+G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTR LAQQI+KV+ ALGD L
Sbjct: 75 KGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYL 134
Query: 437 NAKCH 451
K H
Sbjct: 135 GVKVH 139
Score = 66.9 bits (156), Expect = 6e-12
Identities = 31/44 (70%), Positives = 35/44 (79%)
Frame = +3
Query: 129 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSK 260
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 89.4 bits (212), Expect = 1e-18
Identities = 43/63 (68%), Positives = 51/63 (80%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDXL 436
+G DVI QAQSGTGKTATF +LQQ+D S+ +CQAL+LAPTR LAQQI+KV+ ALGD L
Sbjct: 77 KGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYL 136
Query: 437 NAK 445
K
Sbjct: 137 GVK 139
Score = 66.9 bits (156), Expect = 6e-12
Identities = 30/47 (63%), Positives = 38/47 (80%)
Frame = +3
Query: 120 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSK 260
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCK 77
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 88.6 bits (210), Expect = 2e-18
Identities = 42/65 (64%), Positives = 51/65 (78%)
Frame = +2
Query: 257 QGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDXL 436
+G DVI QAQSGTGKTATF +LQQ+D ++ +CQAL+LAPTR LAQQI+KV+ ALGD
Sbjct: 75 KGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQ 134
Query: 437 NAKCH 451
K H
Sbjct: 135 GVKVH 139
Score = 67.7 bits (158), Expect = 3e-12
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +3
Query: 129 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSK 260
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P K
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCK 75
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 83.8 bits (198), Expect = 5e-17
Identities = 40/67 (59%), Positives = 51/67 (76%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430
+LQGRDVIAQAQSGTGKT+ ++S+ Q +DTS RE QALIL+PTR LA Q +K + A+G
Sbjct: 69 ILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGL 128
Query: 431 XLNAKCH 451
N + H
Sbjct: 129 HANIQAH 135
Score = 63.7 bits (148), Expect = 6e-11
Identities = 26/41 (63%), Positives = 35/41 (85%)
Frame = +3
Query: 129 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMP 251
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMP 68
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 74.1 bits (174), Expect = 4e-14
Identities = 34/67 (50%), Positives = 49/67 (73%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430
+L+GRDVIAQAQSGTGKT+ +IS+ Q ++ S R+ Q L+L+P+R LA Q +K + A+G
Sbjct: 56 ILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGA 115
Query: 431 XLNAKCH 451
N + H
Sbjct: 116 HTNIQAH 122
Score = 54.0 bits (124), Expect = 5e-08
Identities = 20/38 (52%), Positives = 32/38 (84%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCSK 260
+++FDDM + +++LRG+Y YG++KPS IQQRA++P K
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILK 58
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 61.3 bits (142), Expect = 3e-10
Identities = 30/61 (49%), Positives = 41/61 (67%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDX 433
L GRD++A+A++GTGKTA F I +L++ID QA+I+ PTR LA Q +V LG
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 434 L 436
L
Sbjct: 226 L 226
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 61.3 bits (142), Expect = 3e-10
Identities = 30/61 (49%), Positives = 41/61 (67%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDX 433
L GRD++A+A++GTGKTA F I +L++ID QA+I+ PTR LA Q +V LG
Sbjct: 166 LTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGKH 225
Query: 434 L 436
L
Sbjct: 226 L 226
Score = 40.3 bits (90), Expect = 6e-04
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK ELL GIY GFE+PS IQ+ +I
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESI 162
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 58.8 bits (136), Expect = 2e-09
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDX 433
L G D++A+A++GTGKT F I +L++ID + QA+IL PTR LA Q +V L
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 434 LN 439
LN
Sbjct: 219 LN 220
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 58.8 bits (136), Expect = 2e-09
Identities = 29/62 (46%), Positives = 40/62 (64%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDX 433
L G D++A+A++GTGKT F I +L++ID + QA+IL PTR LA Q +V L
Sbjct: 159 LTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSKY 218
Query: 434 LN 439
LN
Sbjct: 219 LN 220
Score = 41.5 bits (93), Expect = 3e-04
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK +LL+GIY GFEKPS IQ+ +I
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESI 155
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 58.4 bits (135), Expect = 2e-09
Identities = 29/66 (43%), Positives = 42/66 (63%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGD 430
+L GRDV+ AQ+G+GKTA F++ IL ++ AL++ PTR LA Q+ + ALG
Sbjct: 92 ILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFALVVTPTRELAFQLAEQFKALGS 151
Query: 431 XLNAKC 448
LN +C
Sbjct: 152 CLNLRC 157
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 54.0 bits (124), Expect = 5e-08
Identities = 28/48 (58%), Positives = 33/48 (68%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQI 403
G DVI QA+SG GKTA F +S LQQI+ S + AL+L TR LA QI
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 130
Score = 32.3 bits (70), Expect = 0.16
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F D LK ELLR I GFE PS +Q I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 54.0 bits (124), Expect = 5e-08
Identities = 28/48 (58%), Positives = 33/48 (68%)
Frame = +2
Query: 260 GRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQI 403
G DVI QA+SG GKTA F +S LQQI+ S + AL+L TR LA QI
Sbjct: 83 GMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 130
Score = 32.3 bits (70), Expect = 0.16
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F D LK ELLR I GFE PS +Q I
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECI 77
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 54.0 bits (124), Expect = 5e-08
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALGDX 433
L G D++A+A++GTGKT F I L++ID QA+IL PTR LA Q +V L
Sbjct: 189 LTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSKY 248
Query: 434 L 436
L
Sbjct: 249 L 249
Score = 42.7 bits (96), Expect = 1e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
F+D LK +LLRGIY GFEKPS IQ+ +I
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESI 185
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 53.2 bits (122), Expect = 8e-08
Identities = 24/55 (43%), Positives = 38/55 (69%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIALG 427
+ +IAQA +G+GKT F + +L ++D ++RE QAL + PTR LA Q +V+ +G
Sbjct: 132 KHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEVLQKMG 186
Score = 33.9 bits (74), Expect = 0.052
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 156 FDDMNLKEELLRGIYA-YGFEKPSAIQ 233
F+D+NL EL++G+Y FEKPS IQ
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQ 119
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 52.0 bits (119), Expect = 2e-07
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 10/75 (13%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQID------TSIREC----QALILAPTRXLAQQI 403
LQGRD+IA+A++GTGKT F I I++++ T+ R + L+LAPTR LA+Q+
Sbjct: 137 LQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQV 196
Query: 404 QKVVIALGDXLNAKC 448
+K + L+ C
Sbjct: 197 EKEIKESAPYLSTVC 211
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 52.0 bits (119), Expect = 2e-07
Identities = 27/46 (58%), Positives = 32/46 (69%)
Frame = +2
Query: 266 DVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQI 403
DVI QA+SG GKTA F +S LQQI+ S + AL+L TR LA QI
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQI 47
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 51.6 bits (118), Expect = 2e-07
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRE--CQALILAPTRXLAQQIQKVVIAL 424
+L G DV+A A++G+GKTA F I +L+++ + + +ALIL+PTR LA+Q K L
Sbjct: 62 ILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFTKEL 121
Query: 425 G 427
G
Sbjct: 122 G 122
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 49.2 bits (112), Expect = 1e-06
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKV 412
L GRD I AQ+G+GKT T+ + I I+ QA+I+ PTR L Q+ KV
Sbjct: 110 LFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELGMQVTKV 163
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 48.0 bits (109), Expect = 3e-06
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 6/58 (10%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRXLAQQIQK 409
++GRD+I +A++GTGKT F I I+ +I + Q L+LAPTR LA+Q++K
Sbjct: 151 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK 208
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 47.6 bits (108), Expect = 4e-06
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRECQALILAPTRXLAQQIQKVVIAL 424
L GRD+ A A +G+GKTA F++ L+++ + + LIL PTR LA QI ++ L
Sbjct: 202 LTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQNL 261
Query: 425 GDXLNAKC 448
+ KC
Sbjct: 262 AQFTDIKC 269
Score = 30.3 bits (65), Expect = 0.64
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 150 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+TF ++NL LLR G++KP+ IQ I
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACI 198
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 46.8 bits (106), Expect = 7e-06
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 12/77 (15%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------------ALILAPTRXLAQ 397
L+G+DVI AQ+G+GKT F+I ILQ + + + + A +L+PTR LA
Sbjct: 44 LEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAI 103
Query: 398 QIQKVVIALGDXLNAKC 448
QI + ALG ++ +C
Sbjct: 104 QIAEQFEALGADISLRC 120
Score = 33.1 bits (72), Expect = 0.090
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +3
Query: 138 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
++VV+TF ++ ++EEL++ G++ PS IQ A+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEAL 40
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 46.4 bits (105), Expect = 9e-06
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 6/58 (10%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI------DTSIRECQALILAPTRXLAQQIQK 409
++GRD+I +A++GTGKT F I I+ +I R L+LAPTR LA+Q++K
Sbjct: 139 MEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK 196
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 44.4 bits (100), Expect = 4e-05
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRXLAQQIQKVVIA 421
+QGRD++A A++G+GKT + I LQ+I R L+L+PTR LA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 422 LGDXLNAKC 448
G C
Sbjct: 253 FGRSSRISC 261
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 44.4 bits (100), Expect = 4e-05
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRXLAQQIQKVVIA 421
+QGRD++A A++G+GKT + I LQ+I R L+L+PTR LA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 422 LGDXLNAKC 448
G C
Sbjct: 253 FGRSSRISC 261
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 44.4 bits (100), Expect = 4e-05
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRXLAQQIQKVVIA 421
+QGRD++A A++G+GKT + I LQ+I R L+L+PTR LA QIQ+ +
Sbjct: 193 MQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVLSPTRELATQIQEEAVK 252
Query: 422 LGDXLNAKC 448
G C
Sbjct: 253 FGRSSRISC 261
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 42.7 bits (96), Expect = 1e-04
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRXLAQQIQK 409
LQ RDVI A++G+GKTA F + +L I + A+++APTR LAQQI++
Sbjct: 348 LQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407
Query: 410 VVIALGDXL 436
+ L
Sbjct: 408 ETVKFAHYL 416
Score = 29.5 bits (63), Expect = 1.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 147 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
+ ++++ L ELL+ + G++KPS IQ AI
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAI 344
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 6/64 (9%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI---DTSIRE---CQALILAPTRXLAQQIQKV 412
+L+G+DV+A+A++G+GKT + + +LQ++ D+ ++ A IL P+R L QQ+
Sbjct: 80 ILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQVYTE 139
Query: 413 VIAL 424
V +L
Sbjct: 140 VSSL 143
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 138 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
++ ++F+++ L L+R + G EKP+ IQQ AI
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAI 77
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRXLAQQIQK 409
L+GRD+I A++G+GKT + + L + R Q LILAPTR LA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRXLAQQIQK 409
L+GRD+I A++G+GKT + + L + R Q LILAPTR LA QIQ+
Sbjct: 200 LKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQE 256
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 41.9 bits (94), Expect = 2e-04
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSIS---ILQQIDTSIRECQA-LILAPTRXLAQQIQKVVIA 421
LQ RD++A A++G+GKT + I +L+ R LILAPTR LA QIQ +
Sbjct: 470 LQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALR 529
Query: 422 LGDXLNAKC 448
G C
Sbjct: 530 FGRSSRISC 538
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 41.9 bits (94), Expect = 2e-04
Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 10/61 (16%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRXLAQQ 400
LL+GRD++A AQ+G+GKTA F I+ I D ++ + A+IL+PTR LA Q
Sbjct: 193 LLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQ 252
Query: 401 I 403
I
Sbjct: 253 I 253
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 41.5 bits (93), Expect = 3e-04
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRXLAQQI 403
A L G+ ++A A +G+GKTA+F + I+ + T R A++LAPTR L Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 404 QKVVIALGDXLNAK 445
+ LG L K
Sbjct: 203 EDQAKMLGKGLPFK 216
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 41.5 bits (93), Expect = 3e-04
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDT--------SIRECQALILAPTRXLAQQI 403
A L G+ ++A A +G+GKTA+F + I+ + T R A++LAPTR L Q+
Sbjct: 6 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 65
Query: 404 QKVVIALGDXLNAK 445
+ LG L K
Sbjct: 66 EDQAKMLGKGLPFK 79
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 41.1 bits (92), Expect = 3e-04
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSI---SILQQIDTSIRECQA-LILAPTRXLAQQIQKVVIA 421
+Q RD++A A++G+GKT + I LQ+I R L+L+PTR LA QIQ +
Sbjct: 264 MQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALK 323
Query: 422 LGDXLNAKC 448
G C
Sbjct: 324 FGKSSKISC 332
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 40.7 bits (91), Expect = 5e-04
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRXLAQQIQKVV 415
++ GRD I A++G+GKT F + +L+ I D E L++APTR L QQI +
Sbjct: 563 IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDI 622
Query: 416 IALGDXLNAKC 448
L +C
Sbjct: 623 RKFSKPLGIRC 633
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 40.3 bits (90), Expect = 6e-04
Identities = 19/55 (34%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +2
Query: 263 RDVIAQAQSGTGKTATFSISILQQI-DTSIRECQALILAPTRXLAQQIQKVVIAL 424
RD+ + +G+GKT ++++ I+Q + +R +AL++ PTR LA Q++ V A+
Sbjct: 63 RDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKDVFDAI 117
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRXLAQQ 400
+L+G+DV+A+A++GTGKT F + ++ + D AL++ PTR LA Q
Sbjct: 88 ILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQ 145
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRXLAQQ 400
+LQG+DV+A+A++GTGKT F + ++ + D+ L++ PTR LA Q
Sbjct: 416 ILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQ 473
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 38.7 bits (86), Expect = 0.002
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIREC---------QALILAPTRXLAQQI 403
LL GRD+I A++G+GKT F I + + ++ L+L+PTR LA QI
Sbjct: 148 LLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQI 207
Query: 404 QKVVIALGDXLNAK 445
V+ G+ K
Sbjct: 208 SDVLREAGEPCGLK 221
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 38.3 bits (85), Expect = 0.002
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI-DTSIRECQ----ALILAPTRXLAQQIQKVV 415
++ GRD I A++G+GKT F + +L+ I D E L++APTR L QQI +
Sbjct: 430 IMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDI 489
Query: 416 IALGDXLNAKC 448
L C
Sbjct: 490 RKFSKALGIIC 500
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 38.3 bits (85), Expect = 0.002
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ-----ALILAPTRXLAQQIQKVVI 418
++GRD+I A++G+GKT ++ + + ++ L+LAPTR LA QIQ+
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193
Query: 419 ALGDXLNAK 445
G K
Sbjct: 194 KFGSSSKIK 202
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 37.9 bits (84), Expect = 0.003
Identities = 30/70 (42%), Positives = 38/70 (54%), Gaps = 12/70 (17%)
Frame = +2
Query: 230 PATRNNA--LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALIL 373
P RN L GRD++A AQ+G+GKTA F I+ I D I + A+IL
Sbjct: 171 PVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVIL 230
Query: 374 APTRXLAQQI 403
+PTR LA QI
Sbjct: 231 SPTRELACQI 240
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 37.9 bits (84), Expect = 0.003
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ---ALILAPTRXLAQQI 403
+L GRDVI A++G+GKTA F + ++ I ++ + +I APTR LA QI
Sbjct: 262 VLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQI 317
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 132 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAI 245
D + V+TF+D +++ I +EKP+AIQ +A+
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQAL 259
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ----ALILAPTRXLAQQIQKVVIA 421
L GRD++ A++G+GKT F I IL+++ + +I++PTR LA Q V+
Sbjct: 106 LCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELAAQTFGVLNK 165
Query: 422 LG 427
+G
Sbjct: 166 VG 167
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 37.5 bits (83), Expect = 0.004
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 242 NNALLQGRDVIAQAQSGTGKTATFSISILQQI 337
N A QG+DVI A++G+GKT F + ILQ++
Sbjct: 222 NVAAYQGKDVIGAAETGSGKTLAFGLPILQRL 253
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 36.7 bits (81), Expect = 0.007
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIRECQALILAPTRXLAQQ 400
+LQG+D++A+A++GTGKT F + ++ + D L++ PTR LA Q
Sbjct: 114 ILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.9 bits (79), Expect = 0.013
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 10/61 (16%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRXLAQQ 400
LL RD++A AQ+G+GKTA F I+ I D + + A+IL+PTR LA Q
Sbjct: 185 LLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQ 244
Query: 401 I 403
I
Sbjct: 245 I 245
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.9 bits (79), Expect = 0.013
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 10/61 (16%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--DTSIRECQ--------ALILAPTRXLAQQ 400
LL RD++A AQ+G+GKTA F I+ I D + + A+IL+PTR LA Q
Sbjct: 185 LLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQ 244
Query: 401 I 403
I
Sbjct: 245 I 245
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 35.9 bits (79), Expect = 0.013
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 13/69 (18%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQI-------------DTSIRECQALILAPTRX 388
A+++G D + Q+ +G+GKT + + IL +I + E QA+I+AP+R
Sbjct: 143 AIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRE 202
Query: 389 LAQQIQKVV 415
L QI + V
Sbjct: 203 LGMQIVREV 211
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 35.5 bits (78), Expect = 0.017
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRXLAQQIQKV 412
LL+G+DV+ A++G+GKT F ++ +L + S R +++ PTR LA Q + V
Sbjct: 123 LLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIVICPTRELAIQTKNV 180
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 35.5 bits (78), Expect = 0.017
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRXLAQQIQKV 412
L +DV+ A +G+GKT F + ++ I S + +I++PTR L+ QI KV
Sbjct: 51 LCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKV 110
Query: 413 VIAL 424
A+
Sbjct: 111 ARAV 114
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 34.7 bits (76), Expect = 0.030
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATF---SISILQQIDTSIRE-CQALILAPTRXLAQQ 400
L+ G DV+ A++G+GKT F ++ +L ++ + R L++ PTR LA Q
Sbjct: 188 LMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLVICPTRELAIQ 241
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 34.7 bits (76), Expect = 0.030
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQID-TSIRECQALILAPTRXLAQQ 400
LL GR+ A A +G+GKT F +L ++ S +A+IL+P R LA Q
Sbjct: 175 LLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQ 225
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 34.7 bits (76), Expect = 0.030
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ------ALILAPTRXLAQQIQKV 412
+L GRDV+ A +GTGKT + ++ + + AL++ PTR L Q+ +
Sbjct: 64 ILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYET 123
Query: 413 V 415
+
Sbjct: 124 L 124
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 34.7 bits (76), Expect = 0.030
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQIDTS------IRECQALILAPTRXLAQQIQKV 412
L +DV+ A +G+GKT F + ++ I S + +I++PTR L+ QI KV
Sbjct: 50 LCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPPKPHQVMGVIISPTRELSAQIHKV 109
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 34.7 bits (76), Expect = 0.030
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 9/59 (15%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRXLAQQI 403
L G+D + +A++GTGK+ F + ++L+ +++ + ALIL PTR LA QI
Sbjct: 363 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 33.5 bits (73), Expect = 0.068
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Frame = +2
Query: 221 FCNP--ATRNNALLQGRDVIAQAQSGTGKTATFSISILQQIDTSI------RECQALILA 376
FC P A L +DV A +G+GKT F + +++ + S + +I++
Sbjct: 38 FCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPPKPHQVMGVIIS 97
Query: 377 PTRXLAQQIQKV 412
PTR L+ QI V
Sbjct: 98 PTRELSTQIYNV 109
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 33.1 bits (72), Expect = 0.090
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Frame = +2
Query: 254 LQGRDVIAQAQSGTGKTATFSI----SILQQIDT-----SIRECQALILAPTRXLAQQI 403
L G+D + +A++GTGK+ F + ++L+ +++ + LIL PTR LA QI
Sbjct: 410 LDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQI 468
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 32.3 bits (70), Expect = 0.16
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISIL-----QQIDTSIRECQ---ALILAPTRXLAQQIQ 406
+L GRD+I A +G+GKT F + ++ ++I I + AL++ P+R LA+Q
Sbjct: 131 VLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTY 190
Query: 407 KVV 415
VV
Sbjct: 191 DVV 193
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 31.5 bits (68), Expect = 0.28
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 14/75 (18%)
Frame = +2
Query: 248 ALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQ--------------ALILAPTR 385
++L G+DVI A++G+GKT + I+ Q+ + + + +LIL P
Sbjct: 113 SILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALDSEVTNREERPFPLKNISLILCPNV 172
Query: 386 XLAQQIQKVVIALGD 430
L +Q+ ++V L D
Sbjct: 173 MLCEQVVRMVNGLVD 187
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 31.1 bits (67), Expect = 0.36
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATF-----SISILQQIDTSIRECQ---ALILAPTRXLAQQIQ 406
+L GRD+I A +G+GKT F I++ +++ I + LI+ P+R LA+Q
Sbjct: 180 ILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTY 239
Query: 407 KVV 415
+VV
Sbjct: 240 EVV 242
>At3g10020.1 68416.m01202 expressed protein
Length = 149
Score = 29.5 bits (63), Expect = 1.1
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 66 GPSK--DQGSYDGPPGMDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQR 239
GP + D PP MD G + D +QV ++ DD+ + EL++G E P+ + +
Sbjct: 83 GPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAV--ELVKGEVEVAKEAPAGVARV 140
Query: 240 AIMP 251
+ P
Sbjct: 141 EVDP 144
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 9/60 (15%)
Frame = +2
Query: 251 LLQGRDVIAQAQSGTGKTATFSISILQQI--------DTSIREC-QALILAPTRXLAQQI 403
++ G+ I QSG+GKT + + ++Q++ S C + ++L PT LA Q+
Sbjct: 408 VIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQV 467
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 245 NALLQGRDVIAQAQSGTGKTATFSISILQQIDTSIRECQALILAPTRXLAQQIQKVVIAL 424
NA++ GRDV+ +G GK S+ Q+ +R L+++P L Q + AL
Sbjct: 99 NAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPLLSLIQDQVMGLAAL 152
Query: 425 G 427
G
Sbjct: 153 G 153
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 21 SSERRSEDWPEDSK---NGPSKDQGSYDGPPGMDPG 119
S R D P + +GPS+ +G YDGP G G
Sbjct: 282 SQGRGGYDGPSQGRGGYDGPSQGRGGYDGPQGRGRG 317
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Frame = +3
Query: 30 RRSEDWPEDSK---NGPSKDQGSYDGP 101
RR D P + +GPS+ +G YDGP
Sbjct: 265 RRGYDGPPQGRGGYDGPSQGRGGYDGP 291
>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
helicase, putative similar to SP|O75643 U5 small nuclear
ribonucleoprotein 200 kDa helicase {Homo sapiens};
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2171
Score = 27.5 bits (58), Expect = 4.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +2
Query: 242 NNALLQGRDVIAQAQSGTGKTATFSISILQQID 340
+ AL + +++ A +G GKT ++ILQQ++
Sbjct: 514 DTALFKAENILLCAPTGAGKTNVAMLTILQQLE 546
>At4g30790.1 68417.m04362 expressed protein
Length = 1148
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 144 LDPSRCQVSQGPFPEVH-RNYLDPSMAHFWNPLANLLTFFQTNKTCFN 4
L P + GP EVH +N+L P M +N ++ LL F + K N
Sbjct: 337 LRPHDAVSALGPMYEVHDKNHL-PKMQACYNSISELLDFCKNKKNEMN 383
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 3 G*NMSYSSERRSEDWPEDSKNGPSKDQGSYDGPP 104
G N S+++ + WP + +G GSY P
Sbjct: 1171 GHNSSFNNSHNNRQWPYSNSHGYDHGSGSYAAHP 1204
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,190,848
Number of Sequences: 28952
Number of extensions: 213248
Number of successful extensions: 741
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -